View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5324-Insertion-3 (Length: 795)

Name: NF5324-Insertion-3
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5324-Insertion-3
NF5324-Insertion-3
[»] chr7 (1 HSPs)
chr7 (215-374)||(47363495-47363658)
[»] chr1 (3 HSPs)
chr1 (336-417)||(4816742-4816823)
chr1 (250-327)||(34711561-34711638)
chr1 (90-181)||(34711674-34711764)
[»] chr3 (5 HSPs)
chr3 (128-329)||(33508392-33508590)
chr3 (336-417)||(25500985-25501066)
chr3 (221-258)||(1930009-1930046)
chr3 (215-287)||(8690337-8690409)
chr3 (215-287)||(9042206-9042278)
[»] chr5 (2 HSPs)
chr5 (364-417)||(41732461-41732514)
chr5 (336-405)||(43391063-43391132)
[»] chr8 (1 HSPs)
chr8 (336-419)||(22642806-22642889)
[»] chr6 (1 HSPs)
chr6 (221-258)||(1069058-1069095)
[»] chr2 (1 HSPs)
chr2 (221-258)||(29370290-29370327)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 9e-63; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 215 - 374
Target Start/End: Original strand, 47363495 - 47363658
Alignment:
Q  215 ttgagttagattgtaagctagtggctgatagcatagttgataggcccaataatcagttggaatttggtaatattatgtctcgttgtagatcatttttgtg 314  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  47363495 ttgagctagattctaagctagtggctgatagcatagttgataggccgaataatcagttggaatttgataatattatgtctcgttgtagatcatttttgtg 47363594  T
Q  315 tcattttccaaacttataaagaaattgtgtcgccca----taacctagcaagagtgtcaaaatt 374  Q
    ||||||| ||||||||||||||||||||||||||||    || |||||||||||||||||||||    
T  47363595 tcatttttcaaacttataaagaaattgtgtcgcccatagctagcctagcaagagtgtcaaaatt 47363658  T

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Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 336 - 417
Target Start/End: Original strand, 4816742 - 4816823
Alignment:
Q  336 aaattgtgtcgcccataacctagcaagagtgtcaaaattgtatgctcatcatcaagtctttgatttgatttcatcttgtatt 417  Q
    ||||| ||||||||||| | ||||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  4816742 aaattatgtcgcccatagcttagcaagggagtcaaaattgtatgctcgtcaccaagtctttgatttgatttcatcttatatt 4816823  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 34711638 - 34711561
Alignment:
Q  250 gttgataggcccaataatcagttggaatttggtaatattatgtctcgttgtagatcatttttgtgtcattttccaaac 327  Q
    ||||||||| |||||||||||| ||||||| |||||||||||||||| ||||||||| | ||||||||| ||||||||    
T  34711638 gttgataggtccaataatcagtcggaatttagtaatattatgtctcgatgtagatcactattgtgtcatgttccaaac 34711561  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 34711764 - 34711674
Alignment:
Q  90 ccattttataaaaagcttcaacgaaatggtatgacagctttccttctccgttagaagcataggcaatggggttgtctgatgccatctcatgg 181  Q
    ||||||||||||| |||| ||||||||||||||||| | |||||||||| | ||||||| | |||||||| |||  ||||||||||| ||||    
T  34711764 ccattttataaaa-gctttaacgaaatggtatgacacccttccttctccttcagaagcagatgcaatgggcttgcgtgatgccatcttatgg 34711674  T

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Target: chr3 (Bit Score: 46; Significance: 8e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 128 - 329
Target Start/End: Original strand, 33508392 - 33508590
Alignment:
Q  128 tttccttctccgttagaagcataggcaatggggttgtctgatgccatctcatggttttgatcaattgagattatcgaaggtgctaaattgagttagattg 227  Q
    ||||| |||||  ||||||||||||||||||| |||  ||| ||||||| ||||  |||||||||||  | |||| ||||||| |||||||| | |||||    
T  33508392 tttccctctccaatagaagcataggcaatgggcttgcgtgacgccatcttatgg-cttgatcaattggaactatcaaaggtgc-aaattgagcttgattg 33508489  T
Q  228 taagctagtggctgatagcatagttgataggcccaataatcagttggaatttggtaatattatgtctcgttgtagatcatttttgtgtcattttccaaac 327  Q
    |||| |||| |  | || |||| |||||||| ||||||||| ||   |||||| ||||||||||| | | ||||||||| | ||||||||||||| ||||    
T  33508490 taagttagtagtgggtatcatatttgataggtccaataatcggtcaaaatttgataatattatgt-ttggtgtagatcactattgtgtcattttctaaac 33508588  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 336 - 417
Target Start/End: Original strand, 25500985 - 25501066
Alignment:
Q  336 aaattgtgtcgcccataacctagcaagagtgtcaaaattgtatgctcatcatcaagtctttgatttgatttcatcttgtatt 417  Q
    |||||||||||||||||   ||||||| |  |||||||||||||||| ||| | ||||||| |||||||| |||||||||||    
T  25500985 aaattgtgtcgcccatagtttagcaagggcatcaaaattgtatgctcgtcaccgagtctttcatttgattccatcttgtatt 25501066  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 1930009 - 1930046
Alignment:
Q  221 tagattgtaagctagtggctgatagcatagttgatagg 258  Q
    |||||||||||||||||| |||||||||||||||||||    
T  1930009 tagattgtaagctagtggttgatagcatagttgatagg 1930046  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 8690337 - 8690409
Alignment:
Q  215 ttgagttagattgtaagctagtggctgatagcatagttgataggcccaataatcagttggaatttggtaatat 287  Q
    ||||| |||||||||||||||| | ||||||||||||||||||| | |||| ||||   || |||||||||||    
T  8690337 ttgagctagattgtaagctagtagttgatagcatagttgataggactaatattcaggctgagtttggtaatat 8690409  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 9042206 - 9042278
Alignment:
Q  215 ttgagttagattgtaagctagtggctgatagcatagttgataggcccaataatcagttggaatttggtaatat 287  Q
    ||||| |||||||||||||||| | ||||||||||||||||||| | |||| ||||   || |||||||||||    
T  9042206 ttgagctagattgtaagctagtagttgatagcatagttgataggactaatattcaggctgagtttggtaatat 9042278  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 41732461 - 41732514
Alignment:
Q  364 gtgtcaaaattgtatgctcatcatcaagtctttgatttgatttcatcttgtatt 417  Q
    ||||||| |||| |||||| ||||||||| ||||||||||||||||||||||||    
T  41732461 gtgtcaagattgcatgctcgtcatcaagtttttgatttgatttcatcttgtatt 41732514  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 336 - 405
Target Start/End: Complemental strand, 43391132 - 43391063
Alignment:
Q  336 aaattgtgtcgcccataacctagcaagagtgtcaaaattgtatgctcatcatcaagtctttgatttgatt 405  Q
    ||||| |||||||||||   ||||||| ||||||||| ||||||||  |||||| || ||||||||||||    
T  43391132 aaattatgtcgcccatactttagcaagggtgtcaaaactgtatgctagtcatcatgtttttgatttgatt 43391063  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 336 - 419
Target Start/End: Complemental strand, 22642889 - 22642806
Alignment:
Q  336 aaattgtgtcgcccataacctagcaagagtgtcaaaattgtatgctcatcatcaagtctttgatttgatttcatcttgtattta 419  Q
    ||||| ||||||||||  | |||| || | ||| || |||||||||  ||| ||||| ||||||||||||||||||||||||||    
T  22642889 aaattatgtcgcccatcgcttagcgagggagtcgaatttgtatgctagtcaccaagtatttgatttgatttcatcttgtattta 22642806  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 1069095 - 1069058
Alignment:
Q  221 tagattgtaagctagtggctgatagcatagttgatagg 258  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  1069095 tagattgtaagctagtggatgatagcatagttcatagg 1069058  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 29370290 - 29370327
Alignment:
Q  221 tagattgtaagctagtggctgatagcatagttgatagg 258  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  29370290 tagattgtaagctagtggttgatagcataattgatagg 29370327  T

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