View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5324-Insertion-7 (Length: 177)
Name: NF5324-Insertion-7
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5324-Insertion-7 |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 6e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 6e-85
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 14579630 - 14579800
Alignment:
| Q |
7 |
actctattctccaaaacagcacacatcacacaacaaattccacctaagatagaaaacacaagaattgaaggttttcttctatagttttccaagaaatatg |
106 |
Q |
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| T |
14579630 |
actctattctccaaaacagcacacatcacacaacaaattccacctaagatagaaaacacaagaattgaaggttttcttctaaggttttccaagaaatatg |
14579729 |
T |
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| Q |
107 |
tggctacacaggaaggtaattccattgaagcactaaaaaccacagccaagtaaatgttgaatcctaaattt |
177 |
Q |
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| T |
14579730 |
ttgctacacaggaaggtaattccattgaagcactaaaaaccacagccaagtaaatgttgaatcctaaattt |
14579800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 14543957 - 14543787
Alignment:
| Q |
7 |
actctattctccaaaacagcacacatcacacaacaaattccacctaagatagaaaacacaagaattgaaggttttcttctatagttttccaagaaatatg |
106 |
Q |
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| T |
14543957 |
actctattctccaaaacagcacacttcacacaacaaattccacctaagatagaaaacacaagaattgaaggttttcttctaaggttttccaagaaatatg |
14543858 |
T |
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| Q |
107 |
tggctacacaggaaggtaattccattgaagcactaaaaaccacagccaagtaaatgttgaatcctaaattt |
177 |
Q |
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| T |
14543857 |
ttgctacacatgaaggtaattccattgaagcactaaaaaccactgccaattaaatgttgaatcctaaattt |
14543787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 34262838 - 34263008
Alignment:
| Q |
7 |
actctattctccaaaacagcacacatcacacaacaaattccacctaagatagaaaacacaagaattgaaggttttcttctatagttttccaagaaatatg |
106 |
Q |
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| T |
34262838 |
actctattctcaacaacagcacacatcacacaacaaattccacctaagattgagaaaacaagaattgaaggttttcttctatagttttccaagaaatatg |
34262937 |
T |
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| Q |
107 |
tggctacacaggaaggtaattccattgaagcactaaaaaccacagccaagtaaatgttgaatcctaaattt |
177 |
Q |
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| T |
34262938 |
ttgctacacatgagggtatttccattgaagcactaaaaaccacagccaaataaatattgaatcccaaattt |
34263008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 35621778 - 35621929
Alignment:
| Q |
26 |
cacacatcacacaacaaattccacctaagatagaaaacacaagaattgaaggttttcttctatagttttccaagaaatatgtggctacacaggaaggtaa |
125 |
Q |
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| T |
35621778 |
cacacatcacacaacaaattccacttaagattgagaaaacaagaattgaaagttttcttctatagttttccaagaagtatattgctacgcaagaaggtat |
35621877 |
T |
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| Q |
126 |
ttccattgaagcactaaaaaccacagccaagtaaatgttgaatcctaaattt |
177 |
Q |
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| T |
35621878 |
ttccattgaagcactaaaaactacagccaaataaatgttgaaccctaaattt |
35621929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 37577569 - 37577694
Alignment:
| Q |
27 |
acacatcacacaacaaattccacctaagatagaaaacacaagaattgaaggttttcttctatagttttccaagaaatatgtggctacacaggaaggtaat |
126 |
Q |
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| T |
37577569 |
acacatcacacaacaaatcccacctaagata---------agaattgaaggttttcttctatagttttccaagaaatatgttactaaacataaaggtatt |
37577659 |
T |
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| Q |
127 |
tccattgaagcactaaaaaccacagccaagtaaat |
161 |
Q |
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| T |
37577660 |
ttcattgaagcattaaaaaccacagccaaataaat |
37577694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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