View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5324-Insertion-9 (Length: 227)
Name: NF5324-Insertion-9
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5324-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 5638545 - 5638761
Alignment:
| Q |
7 |
acatatttggattcaaacaccattgagatattatgtaagccaatactattcaagtttatgctcaaccaacatcatctgtcattgaaaccattattttaaa |
106 |
Q |
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| T |
5638545 |
acatatttggattcaaacaccattgagatattatgtaagccaatactattcaagtttatgctcaaccaacatcatctgttattgaaaccattattttaaa |
5638644 |
T |
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| Q |
107 |
gaaaagccccactacagtgaaacttgtgatatgatgcacaaaatgctatacaaggtaatggcctgaggtaaatataagattgtgttctgttttccataac |
206 |
Q |
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| T |
5638645 |
gaaaagccccactacagtgaaacttgtgatatgatgcacaaaaggctatacaaggtaatggcctgaggtaaatataagattgtgttctgttttccataac |
5638744 |
T |
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| Q |
207 |
caaacttaacagtgttt |
223 |
Q |
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| T |
5638745 |
caaacttaacagtgttt |
5638761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 20624895 - 20624846
Alignment:
| Q |
173 |
ggtaaatataagattgtgttctgttttccataaccaaacttaacagtgtt |
222 |
Q |
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| T |
20624895 |
ggtaaatataagattgtgttctgttttccataaccaaacttaacactgtt |
20624846 |
T |
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