View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5324_high_16 (Length: 255)
Name: NF5324_high_16
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5324_high_16 |
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| [»] scaffold0038 (2 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 28180407 - 28180210
Alignment:
| Q |
10 |
tgggtaagatgttctcttaccattatcatcaattttcaatcattgatgaccttacattatttgaaactgataaatatctttataagcatataatctataa |
109 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| | ||||||||||| |
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| T |
28180407 |
tgggtaagatgttctcttagcattatcatcaattttcaatcattgaagaccttacattatttgaaactgagaaata--tttatatg--gataatctataa |
28180312 |
T |
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| Q |
110 |
aattgaaaatatgaagaaccgtgcaatctagtctaacatatatatcaaagtagccaatggttcag----attagactataatgtaaaatcttcttgaaat |
205 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| || ||||| |
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| T |
28180311 |
aattgaaaatatcaagaaccgtgcaatctagtctaacataaatatcaaagtagccaatggttcagattaattagactataatgtaaaatctactcgaaat |
28180212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 64 - 232
Target Start/End: Complemental strand, 28242047 - 28241875
Alignment:
| Q |
64 |
cattatttgaaactgataaatatctttataagcatataatctataaaattgaaaatatgaagaaccgtgcaatctagtctaacatatatatcaaagtagc |
163 |
Q |
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|||||||||||||||| |||||| |||||||||||| | ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28242047 |
cattatttgaaactgagaaatat--ttataagcatattaactataaagttgaaaatatcaagaaccgtgcaatctagtctaacataaatatcaaagtagc |
28241950 |
T |
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| Q |
164 |
caatggttcag------attagactataatgtaaaatcttcttgaaatatatatcaacgtaccagcaccagtcac |
232 |
Q |
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| T |
28241949 |
caatggttcagattattattagactataaagtaaaatcttcttgaaatatatatcaacataccagaaccagtcac |
28241875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 28225097 - 28225032
Alignment:
| Q |
112 |
ttgaaaatatgaagaaccgtgcaatctagtctaacatatatatcaaagtagccaatggttcagatta |
178 |
Q |
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| T |
28225097 |
ttgaaaatatcaagaatcatg-aatctagtctaacataaatatcaaagtagcaaatggtacagatta |
28225032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 28148972 - 28148927
Alignment:
| Q |
10 |
tgggtaagatgttctcttaccattatcatcaattttcaatcattga |
55 |
Q |
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| T |
28148972 |
tgggtaagctgttctcatagcattatcatcaattttcaatcattga |
28148927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 64 - 232
Target Start/End: Complemental strand, 42209 - 42037
Alignment:
| Q |
64 |
cattatttgaaactgataaatatctttataagcatataatctataaaattgaaaatatgaagaaccgtgcaatctagtctaacatatatatcaaagtagc |
163 |
Q |
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|||||||||||||||| |||||| |||||||||||| | ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42209 |
cattatttgaaactgagaaatat--ttataagcatattaactataaagttgaaaatatcaagaaccgtgcaatctagtctaacataaatatcaaagtagc |
42112 |
T |
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| Q |
164 |
caatggttcag------attagactataatgtaaaatcttcttgaaatatatatcaacgtaccagcaccagtcac |
232 |
Q |
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| T |
42111 |
caatggttcagattattattagactataaagtaaaatcttcttgaaatatatatcaacataccagaaccagtcac |
42037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 25595 - 25530
Alignment:
| Q |
112 |
ttgaaaatatgaagaaccgtgcaatctagtctaacatatatatcaaagtagccaatggttcagatta |
178 |
Q |
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| T |
25595 |
ttgaaaatatcaagaatcatg-aatctagtctaacataaatatcaaagtagcaaatggtacagatta |
25530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 58778 - 58906
Alignment:
| Q |
19 |
tgttctcttaccattatcatcaattttcaatcattgatgaccttacattatttgaaactgataaatatctttataagcatataatctataaaattgaaaa |
118 |
Q |
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||||||| || |||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
58778 |
tgttctcatagcattatcatcaattttcaatcattgaagacgt-acattatttgaaactgataaatat--ttataagcatataatctataaaattgaaaa |
58874 |
T |
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| Q |
119 |
tatgaagaaccgtgcaatctagtctaacatat |
150 |
Q |
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||| |||||||||||||||||||||||||||| |
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| T |
58875 |
tatcaagaaccgtgcaatctagtctaacatat |
58906 |
T |
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