View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5324_high_18 (Length: 251)
Name: NF5324_high_18
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5324_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 5 - 243
Target Start/End: Complemental strand, 20203093 - 20202855
Alignment:
| Q |
5 |
gaaggagatgccctcacgtggtgccattggatgcactctaatgcttagcttcattcttgacctactattctccatgctcttgaactgcctttttcccctt |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20203093 |
gaaggagatgccctcacgtggtgccattggatgcactctaatggttagcttcattcttgacctactattctccatgctcttgaactgcctttttcccctt |
20202994 |
T |
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| Q |
105 |
catactttgaagatccaaatggcactctctacaaactctgtcaaaccaccacagttcaaaactaccaatctcgtgtttaaactttagcaaatcgcattat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20202993 |
catactttgaagatccaaatggcactctctacaaactctgtcaaaccaccacagttcaaaactaccaatctcgtgtttaaactttagcaaatcgcattat |
20202894 |
T |
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| Q |
205 |
tggccttcgcctacaatgttacttaagttgtttcatctc |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
20202893 |
tggccttcgcctacaatgttacttaagttgtttcatctc |
20202855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 5 - 243
Target Start/End: Complemental strand, 22097116 - 22096878
Alignment:
| Q |
5 |
gaaggagatgccctcacgtggtgccattggatgcactctaatgcttagcttcattcttgacctactattctccatgctcttgaactgcctttttcccctt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22097116 |
gaaggagatgccctcacgtggtgccattggatgcactctaatggttagcttcattcttgacctactattctccatgctcttgaactgcctttttcccctt |
22097017 |
T |
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| Q |
105 |
catactttgaagatccaaatggcactctctacaaactctgtcaaaccaccacagttcaaaactaccaatctcgtgtttaaactttagcaaatcgcattat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22097016 |
catactttgaagatccaaatggcactctctacaaactctgtcaaaccaccacagttcaaaactaccaatctcgtgtttaaactttagcaaatcgcattat |
22096917 |
T |
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| Q |
205 |
tggccttcgcctacaatgttacttaagttgtttcatctc |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
22096916 |
tggccttcgcctacaatgttacttaagttgtttcatctc |
22096878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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