View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5324_high_20 (Length: 249)

Name: NF5324_high_20
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5324_high_20
NF5324_high_20
[»] chr1 (1 HSPs)
chr1 (1-215)||(13396675-13396889)
[»] chr6 (2 HSPs)
chr6 (1-204)||(795966-796169)
chr6 (1-204)||(8273619-8273822)
[»] chr5 (1 HSPs)
chr5 (1-204)||(19944602-19944805)
[»] chr7 (1 HSPs)
chr7 (1-204)||(6692652-6692855)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 13396675 - 13396889
Alignment:
Q  1 tctacttttatctctcctttgctaaagtacaaacatttcttgctgggaccttgtaaataactcaaaatccacttaattgtttcccaatgagcttcacctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13396675 tctacttttatctctcctttgctaaagtacaaacatttcttgctgggaccttgtaaataactcaaaatccacttaattgcttcccaatgagcttcacctg 13396774  T
Q  101 gatttgacataaacctgctaacaactcccactgcattgccaatgtctcgcttcatccagaccattagacacatcaaacttccaagttctgaagcatatgg 200  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  13396775 gatttgacataaacctgctaacaaatcccactgcattgccaatgtctcgcttcatccagaccattacatacatcaaacttccaagttctgaagcatatgg 13396874  T
Q  201 aatcctagcaattaa 215  Q
    ||||||||| |||||    
T  13396875 aatcctagccattaa 13396889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 795966 - 796169
Alignment:
Q  1 tctacttttatctctcctttgctaaagtacaaacatttcttgctgggaccttgtaaataactcaaaatccacttaattgtttcccaatgagcttcacctg 100  Q
    |||||||||||||||||||||| |||||||||||||||||   |||  |||  || ||| ||||||||||| ||||  | |||||||||||||| |||||    
T  795966 tctacttttatctctcctttgccaaagtacaaacatttctctgtggtgcctcttagatacctcaaaatccatttaaccgcttcccaatgagctttacctg 796065  T
Q  101 gatttgacataaacctgctaacaactcccactgcattgccaatgtctcgcttcatccagaccattagacacatcaaacttccaagttctgaagcatatgg 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| || |  | || ||||||  | ||||||||||||||| | |||||||||||||    
T  796066 gatttgacataaacctgctaacaactcccactgcatggccaatgtctggccttgtacaaaccattgcatacatcaaacttccaattgctgaagcatatgg 796165  T
Q  201 aatc 204  Q
    ||||    
T  796166 aatc 796169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 8273822 - 8273619
Alignment:
Q  1 tctacttttatctctcctttgctaaagtacaaacatttcttgctgggaccttgtaaataactcaaaatccacttaattgtttcccaatgagcttcacctg 100  Q
    |||||||||||||||||||||| |||||||||||||||||   |||  |||  || ||| ||||||||||| ||||  | |||||||||||||| |||||    
T  8273822 tctacttttatctctcctttgccaaagtacaaacatttctctgtggtgcctcttagatacctcaaaatccatttaaccgcttcccaatgagctttacctg 8273723  T
Q  101 gatttgacataaacctgctaacaactcccactgcattgccaatgtctcgcttcatccagaccattagacacatcaaacttccaagttctgaagcatatgg 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| || |  | || ||||||  | ||||||||||||||| | |||||||||||||    
T  8273722 gatttgacataaacctgctaacaactcccactgcatggccaatgtctggccttgtacaaaccattgcatacatcaaacttccaattgctgaagcatatgg 8273623  T
Q  201 aatc 204  Q
    ||||    
T  8273622 aatc 8273619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 19944805 - 19944602
Alignment:
Q  1 tctacttttatctctcctttgctaaagtacaaacatttcttgctgggaccttgtaaataactcaaaatccacttaattgtttcccaatgagcttcacctg 100  Q
    |||||||||||||||||||||| |||||||||||||||||   |||  |||  || ||| ||||||||||| ||||  | |||||||||||||| |||||    
T  19944805 tctacttttatctctcctttgccaaagtacaaacatttctctgtggtgcctcttagatacctcaaaatccatttaaccgcttcccaatgagctttacctg 19944706  T
Q  101 gatttgacataaacctgctaacaactcccactgcattgccaatgtctcgcttcatccagaccattagacacatcaaacttccaagttctgaagcatatgg 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| || |  | || ||||||  | ||||||||||||||| | |||||||||||||    
T  19944705 gatttgacataaacctgctaacaactcccactgcatggccaatgtctggccttgtacaaaccattgcatacatcaaacttccaattgctgaagcatatgg 19944606  T
Q  201 aatc 204  Q
    ||||    
T  19944605 aatc 19944602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 6692855 - 6692652
Alignment:
Q  1 tctacttttatctctcctttgctaaagtacaaacatttcttgctgggaccttgtaaataactcaaaatccacttaattgtttcccaatgagcttcacctg 100  Q
    |||||||||||||||||||||| |||||||||||||||||   |||  |||  || ||| ||||||||||| ||||  | |||||||||||||| |||||    
T  6692855 tctacttttatctctcctttgccaaagtacaaacatttctctgtggtgcctcttagatacctcaaaatccatttaaccgcttcccaatgagctttacctg 6692756  T
Q  101 gatttgacataaacctgctaacaactcccactgcattgccaatgtctcgcttcatccagaccattagacacatcaaacttccaagttctgaagcatatgg 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| || |  | || ||||||    ||||||||||||||| | |||||||||||||    
T  6692755 gatttgacataaacctgctaacaactcccactgcatggccaatgtctggccttgtacaaaccattgcgtacatcaaacttccaattgctgaagcatatgg 6692656  T
Q  201 aatc 204  Q
    ||||    
T  6692655 aatc 6692652  T

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