View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5324_high_22 (Length: 232)
Name: NF5324_high_22
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5324_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 27290520 - 27290714
Alignment:
| Q |
19 |
agcgatttgatcccacgattttaaattaaaactttttt-gtaaactccataaagttgtacaccacatgctacgtctcgtctcagatatcttttagacaaa |
117 |
Q |
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| T |
27290520 |
agcgatttgatcccacgattttaaattaaaactttttttgtaaactccataa-gttgtacaccacatgctacgtctcgtctcagatatcttttagacaaa |
27290618 |
T |
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| Q |
118 |
taactnnnnnnnntatattattgtttaatatttctatataacctcataaatatttgtggagttgaacttgtaatattagcgatttttaatgtatcc |
213 |
Q |
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| T |
27290619 |
taactaaaaaaaatatattattgtttaatatttctatataacctcataaatatttgtggagttcaacttgtaatattagcgatttttagtgtatcc |
27290714 |
T |
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