View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5324_high_7 (Length: 365)
Name: NF5324_high_7
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5324_high_7 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 20203751 - 20203393
Alignment:
| Q |
1 |
cctcctcaagtacttgaaggattatgatgtgtccattaagggtcataggagcacttgaattactgcctagtcacctaaatactagaatgttgcttttgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20203751 |
cctcctcaagtacttgaaggattatgatgtgtccattaagggtcataggagcacttgaattactgcctagtcacctaaatactagaatgttgcttttgct |
20203652 |
T |
|
| Q |
101 |
ctacagctgtgcaattctcttagtcataggttgatagctacctatagctgccccttagtactacgattgagttcttatcctatatgtattggaatgtttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
20203651 |
ctacagctgtgcaattctcttagtcataggttgatagttacctatagctgccccttagtactaggattgaattcttatcctatatgtattggaatgtttt |
20203552 |
T |
|
| Q |
201 |
atgaaataaaggtacagaaataattgttcaatcattaaatctactccactcacgaagcctatttttattccttacatttcatttatcctcttcctctttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20203551 |
atgaaataaaggtacagaaataattgttcaatcattaaatctactccactcacgaagcctatttttattccttacatttcatttatcc------tctttg |
20203458 |
T |
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| Q |
301 |
ttataagagagtaccttacattggtgctttcattgctatggatccacctcccccacctccttcca |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20203457 |
ttataagagagtaccttacattggtgctttcattgctatggatccacctcccccacctccttcca |
20203393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 22097774 - 22097416
Alignment:
| Q |
1 |
cctcctcaagtacttgaaggattatgatgtgtccattaagggtcataggagcacttgaattactgcctagtcacctaaatactagaatgttgcttttgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22097774 |
cctcctcaagtacttgaaggattatgatgtgtccattaagggtcataggagcacttgaattactgcctagtcacctaaatactagaatgttgcttttgct |
22097675 |
T |
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| Q |
101 |
ctacagctgtgcaattctcttagtcataggttgatagctacctatagctgccccttagtactacgattgagttcttatcctatatgtattggaatgtttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
22097674 |
ctacagctgtgcaattctcttagtcataggttgatagttacctatagctgccccttagtactaggattgaattcttatcctatatgtattggaatgtttt |
22097575 |
T |
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| Q |
201 |
atgaaataaaggtacagaaataattgttcaatcattaaatctactccactcacgaagcctatttttattccttacatttcatttatcctcttcctctttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22097574 |
atgaaataaaggtacagaaataattgttcaatcattaaatctactccactcacgaagcctatttttattccttacatttcatttatcc------tctttg |
22097481 |
T |
|
| Q |
301 |
ttataagagagtaccttacattggtgctttcattgctatggatccacctcccccacctccttcca |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22097480 |
ttataagagagtaccttacattggtgctttcattgctatggatccacctcccccacctccttcca |
22097416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 20193818 - 20193544
Alignment:
| Q |
7 |
caagtacttgaaggattatgatgtgtccattaagggtcataggagcacttgaattactgcctagtcacctaaatactagaatgttgcttttgctctacag |
106 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
20193818 |
caagtacttgaaggattatgacgtgtccattaagggtcataggaccacttgaattactgcctagtcacctaaacactagaatgttccttttgctctacca |
20193719 |
T |
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| Q |
107 |
ctgtgcaattctcttagtcata-ggttgatagctacctatagctgccccttagtactacgattgagttcttatcctatatgtattggaatgttttatgaa |
205 |
Q |
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|||||||||||||||||||||| |||||||||||||||| || || |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20193718 |
ctgtgcaattctcttagtcataaggttgatagctacctacagttgtcccttagtactaggattgagttcttatcctatatgtattggaatgttttatgaa |
20193619 |
T |
|
| Q |
206 |
ataaaggtacagaaataattgttcaatcattaaatctactccactcacgaagcctatttttattccttacatttc |
280 |
Q |
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||||||| | ||||||||||||| ||||||| | ||||||||||||||| |||||||||||||||||| |||||| |
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| T |
20193618 |
ataaaggcagagaaataattgttgaatcattgagtctactccactcacggagcctatttttattccttgcatttc |
20193544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 22087841 - 22087567
Alignment:
| Q |
7 |
caagtacttgaaggattatgatgtgtccattaagggtcataggagcacttgaattactgcctagtcacctaaatactagaatgttgcttttgctctacag |
106 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
22087841 |
caagtacttgaaggattatgacgtgtccattaagggtcataggaccacttgaattactgcctagtcacctaaacactagaatgttccttttgctctacca |
22087742 |
T |
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| Q |
107 |
ctgtgcaattctcttagtcata-ggttgatagctacctatagctgccccttagtactacgattgagttcttatcctatatgtattggaatgttttatgaa |
205 |
Q |
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|||||||||||||||||||||| |||||||||||||||| || || |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22087741 |
ctgtgcaattctcttagtcataaggttgatagctacctacagttgtcccttagtactaggattgagttcttatcctatatgtattggaatgttttatgaa |
22087642 |
T |
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| Q |
206 |
ataaaggtacagaaataattgttcaatcattaaatctactccactcacgaagcctatttttattccttacatttc |
280 |
Q |
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||||||| | ||||||||||||| ||||||| | ||||||||||||||| |||||||||||||||||| |||||| |
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| T |
22087641 |
ataaaggcagagaaataattgttgaatcattgagtctactccactcacggagcctatttttattccttgcatttc |
22087567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 34703623 - 34703539
Alignment:
| Q |
192 |
gaatgttttatgaaataaaggtacagaaataattgttcaatcattaaatctactccactcacgaagcctatttttattccttacatt |
278 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| | ||| |||||||||||||| |||| |
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| T |
34703623 |
gaatgttttatgaaataaag--acagaaataattgttcaatcattgagtctactccactcggggagcttatttttattccttgcatt |
34703539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 34704280 - 34704196
Alignment:
| Q |
54 |
cttgaattactgcctagtcacctaaatactagaatgttgcttttgctctacagctgtgcaattctcttagtcataggttgatagcta |
140 |
Q |
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|||||||| |||||| ||||||| ||||||| |||||| ||||| ||||||||||| ||||| |||| ||||| ||||||||||| |
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| T |
34704280 |
cttgaattcctgccttgtcaccttaatacta-aatgttcctttt-ctctacagctgcacaattatcttggtcattagttgatagcta |
34704196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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