View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5324_high_9 (Length: 346)

Name: NF5324_high_9
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5324_high_9
NF5324_high_9
[»] chr8 (10 HSPs)
chr8 (16-346)||(2007428-2007758)
chr8 (109-346)||(2004141-2004378)
chr8 (107-346)||(1969263-1969502)
chr8 (116-337)||(2011143-2011364)
chr8 (127-337)||(1965330-1965540)
chr8 (133-343)||(2437066-2437270)
chr8 (135-346)||(1963651-1963862)
chr8 (116-346)||(2017931-2018161)
chr8 (200-346)||(2014632-2014778)
chr8 (165-202)||(23269096-23269133)
[»] chr1 (2 HSPs)
chr1 (127-340)||(5906317-5906530)
chr1 (127-337)||(5902836-5903046)
[»] chr4 (2 HSPs)
chr4 (30-96)||(5890259-5890325)
chr4 (131-202)||(5890603-5890674)


Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 346
Target Start/End: Original strand, 2007428 - 2007758
Alignment:
Q  16 tacaaggaagatcttgaatcttggtggagtaaaggtattactctttcagggaaaatccatacaaagaaatatacgaggaatatgaatcttagatttttaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2007428 tacaaggaagatcttgaatcttggtggagtaaaggtattactctttcagggaaaatccatacaaagaaatatacgaggaatatgaatcttagatttttaa 2007527  T
Q  116 gtttttctacgccaaatttctccacttaagtgctatttgagaaatcgtttttgtagaagaaccatcttctttgactgcatttgaagcagcttcttttaat 215  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2007528 gtttttctacaccaaatttctccacttaagtgctatttgagaaatagtttttgtagaagaaccatcttctttgactgcatttgaagcagcttcttttaat 2007627  T
Q  216 tccttcatgttattgcgtaatttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccactatgccattttcattaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2007628 tccttcatgttattgcgtaatttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccactatgccattttcattaa 2007727  T
Q  316 cacttgccctcagtcccacttttagtccttc 346  Q
    |||||||||||||||||||||||||||||||    
T  2007728 cacttgccctcagtcccacttttagtccttc 2007758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 109 - 346
Target Start/End: Original strand, 2004141 - 2004378
Alignment:
Q  109 tttttaagtttttctacgccaaatttctccacttaagtgctatttgagaaatcgtttttgtagaagaaccatcttctttgactgcatttgaagcagcttc 208  Q
    |||||| ||||| |||| | |||||||||||||| ||||||| ||||||||| || |||||||||||||||||||||||||| ||||| ||||||| |||    
T  2004141 tttttaggttttcctacactaaatttctccacttgagtgctaattgagaaatagtgtttgtagaagaaccatcttctttgacagcattcgaagcagattc 2004240  T
Q  209 ttttaattccttcatgttattgcgtaatttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccactatgccattt 308  Q
    |||||||||||||||||||||||| ||||||||||| || || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2004241 ttttaattccttcatgttattgcgcaatttctcaccttcttccccttccatgagacacttgatcaccttagcaacctctaccctttccactatgccattt 2004340  T
Q  309 tcattaacacttgccctcagtcccacttttagtccttc 346  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  2004341 tcattaacacttgccctcaatcccacttttagtccttc 2004378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 107 - 346
Target Start/End: Complemental strand, 1969502 - 1969263
Alignment:
Q  107 gatttttaagtttttctacgccaaatttctccacttaagtgctatttgagaaatcgtttttgtagaagaaccatcttctttgactgcatttgaagcagct 206  Q
    |||||||||||||| |||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  1969502 gatttttaagttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagct 1969403  T
Q  207 tcttttaattccttcatgttattgcgtaatttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccactatgccat 306  Q
    |||||||||||||||||||||||||| || |||||||| || |||||||||||||||  ||||||||||||| |||||||| | |||||||| ||||| |    
T  1969402 tcttttaattccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgt 1969303  T
Q  307 tttcattaacacttgccctcagtcccacttttagtccttc 346  Q
    |||||||||| |||| |||||||||||||||||| |||||    
T  1969302 tttcattaactcttggcctcagtcccacttttaggccttc 1969263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 116 - 337
Target Start/End: Original strand, 2011143 - 2011364
Alignment:
Q  116 gtttttctacgccaaatttctccacttaagtgctatttgagaaatcgtttttgtagaagaaccatcttctttgactgcatttgaagcagcttcttttaat 215  Q
    |||||||| | |||||||||||||||| |||| || ||||||||| || ||||||||||| ||||||||||||| |||||| |||||| |||||||||||    
T  2011143 gtttttctgcaccaaatttctccacttgagtgttaattgagaaatagtctttgtagaagatccatcttctttgagtgcattagaagcaacttcttttaat 2011242  T
Q  216 tccttcatgttattgcgtaatttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccactatgccattttcattaa 315  Q
    |||||||| |||||| | |||||||||| ||| |||||||||||||||  ||||||||||||||||||||| |||||||| || || |||||||| ||||    
T  2011243 tccttcatattattgtgcaatttctcacactcttctccttccatgagacgcttgatcaccttagcaacctccaccctttcgacaataccattttcgttaa 2011342  T
Q  316 cacttgccctcagtcccacttt 337  Q
    | |||| |||||||||||||||    
T  2011343 ctcttggcctcagtcccacttt 2011364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 127 - 337
Target Start/End: Complemental strand, 1965540 - 1965330
Alignment:
Q  127 ccaaatttctccacttaagtgctatttgagaaatcgtttttgtagaagaaccatcttctttgactgcatttgaagcagcttcttttaattccttcatgtt 226  Q
    |||||||||||||||| |||| || |||||| || || ||||||||||| ||||||||||||| |||||| |||||| || ||||||| |||||||| ||    
T  1965540 ccaaatttctccacttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgcattggaagcaactccttttaactccttcatatt 1965441  T
Q  227 attgcgtaatttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccactatgccattttcattaacacttgccctc 326  Q
    |||| | |||||||||| ||| ||||||||||||||| |||||||||||||||||||||| |||||||| || || || ||||| ||||| ||||  |||    
T  1965440 attgtgcaatttctcacactcttctccttccatgagacacttgatcaccttagcaacctccaccctttcgacaataccgttttcgttaactcttggtctc 1965341  T
Q  327 agtcccacttt 337  Q
    |||||||||||    
T  1965340 agtcccacttt 1965330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 133 - 343
Target Start/End: Complemental strand, 2437270 - 2437066
Alignment:
Q  133 ttctccacttaagtgctatttgagaaatcgtttttgtagaagaaccatcttctttgactgcatttgaagcagcttcttttaattccttcatgttattgcg 232  Q
    |||||||||| |||| || ||||||||| || ||||| ||||||||||||||||||| |||||| |||||||||||||||| ||| ||||| ||| | |     
T  2437270 ttctccacttgagtgttaattgagaaatagtctttgtcgaagaaccatcttctttgagtgcattagaagcagcttcttttagttctttcatattactcc- 2437172  T
Q  233 taatttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccactatgccattttcattaacacttgccctcagtccc 332  Q
     | |||       || ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| ||||||||||    
T  2437171 -actttagt----tcttctccttccatgagacacttgatcaccttagcaacctctaccctttccacaatgccattttcatgaactcttggcctcagtccc 2437077  T
Q  333 acttttagtcc 343  Q
    |||||||||||    
T  2437076 acttttagtcc 2437066  T

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Target: chr8; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 135 - 346
Target Start/End: Complemental strand, 1963862 - 1963651
Alignment:
Q  135 ctccacttaagtgctatttgagaaatcgtttttgtagaagaaccatcttctttgactgcatttgaagcagcttcttttaattccttcatgttattgcgta 234  Q
    |||||||| ||||||| ||||||||  || ||||||| |||||||||||||||   | || |   |||||||||||| ||||||||||| ||||| || |    
T  1963862 ctccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgca 1963763  T
Q  235 atttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccactatgccattttcattaacacttgccctcagtcccac 334  Q
     |||| |||| || || |||||||||||| ||||||||| || |||||  |||||||||||||| |||||||| || ||||| |||| ||||||||||||    
T  1963762 gtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctcagtcccac 1963663  T
Q  335 ttttagtccttc 346  Q
    |||||| |||||    
T  1963662 ttttaggccttc 1963651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 346
Target Start/End: Original strand, 2017931 - 2018161
Alignment:
Q  116 gtttttctacgccaaatttctccacttaagtgctatttgagaaatcgtttttgtagaagaaccatcttctttgactgcatttgaagcagcttcttttaat 215  Q
    |||||||||  |||||||||||||||| ||||||| ||||||||  || |||||| |||| ||||| |||||   |||| |   ||||| ||||||||||    
T  2017931 gtttttctataccaaatttctccacttgagtgctaattgagaaagtgtctttgtaaaagatccatcatctttatgtgcactattagcagattcttttaat 2018030  T
Q  216 tccttcatgttattgcgtaatttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccactatgccattttcattaa 315  Q
    |||||||| || ||||| | |||| |||| || || |||||||||||| ||||||| | ||  ||||  | |||| ||||||| |||||||| | |||||    
T  2018031 tccttcatatttttgcgcagtttcccaccttcttccccttccatgagacacttgattaactctgcaatttgtaccttttccacaatgccattctgattaa 2018130  T
Q  316 cacttgccctcagtcccacttttagtccttc 346  Q
       ||| ||||||||||||||||||||||||    
T  2018131 tttttggcctcagtcccacttttagtccttc 2018161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 200 - 346
Target Start/End: Original strand, 2014632 - 2014778
Alignment:
Q  200 agcagcttcttttaattccttcatgttattgcgtaatttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccact 299  Q
    ||||| |||||||||||||||||| || ||||| | |||| |||| || || |||||||||||| ||||||| | ||  ||||  | |||| |||||||     
T  2014632 agcagattcttttaattccttcatatttttgcgcagtttcccaccttcttccccttccatgagacacttgattaactctgcaatttgtaccttttccaca 2014731  T
Q  300 atgccattttcattaacacttgccctcagtcccacttttagtccttc 346  Q
    |||||||| | |||||   ||| ||||||||||||||||||||||||    
T  2014732 atgccattctgattaatttttggcctcagtcccacttttagtccttc 2014778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 23269133 - 23269096
Alignment:
Q  165 tttgtagaagaaccatcttctttgactgcatttgaagc 202  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  23269133 tttgtagaagaaccatcttctttgagtgcattagaagc 23269096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 127 - 340
Target Start/End: Complemental strand, 5906530 - 5906317
Alignment:
Q  127 ccaaatttctccacttaagtgctatttgagaaatcgtttttgtagaagaaccatcttctttgactgcatttgaagcagcttcttttaattccttcatgtt 226  Q
    |||||||| |||||||  |||||| ||||||||  || ||| ||||||| ||||||||||  | |||||| | ||| |||||||| ||||||||||| ||    
T  5906530 ccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttcttgaagtgcattagtagctgcttctttcaattccttcatatt 5906431  T
Q  227 attgcgtaatttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccactatgccattttcattaacacttgccctc 326  Q
    |||||| ||||||||||  || || |||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||||||| |||| ||||    
T  5906430 attgcgcaatttctcacattcttccccttccatgagacacttgatcaccttagaaacctctatcctttccacaatgccattttcattaactcttggcctc 5906331  T
Q  327 agtcccacttttag 340  Q
    | |||||| |||||    
T  5906330 actcccacctttag 5906317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 127 - 337
Target Start/End: Complemental strand, 5903046 - 5902836
Alignment:
Q  127 ccaaatttctccacttaagtgctatttgagaaatcgtttttgtagaagaaccatcttctttgactgcatttgaagcagcttcttttaattccttcatgtt 226  Q
    |||||||||||||||| ||||||| ||||||||| || ||| ||||||| || ||||||||||  ||||| | || ||||||||||||||||||||| ||    
T  5903046 ccaaatttctccacttgagtgctaattgagaaatggtctttctagaagacccgtcttctttgagcgcattagtagaagcttcttttaattccttcatatt 5902947  T
Q  227 attgcgtaatttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccactatgccattttcattaacacttgccctc 326  Q
    |||||| || |||||||  || |||||||||||||||  ||||||||  |||| ||  ||  ||||||| || |||||||| |||||||| |||| ||||    
T  5902946 attgcgcaaattctcacattcttctccttccatgagacccttgatcaatttagaaatttcctccctttcaacaatgccattatcattaacccttggcctc 5902847  T
Q  327 agtcccacttt 337  Q
    |||||||||||    
T  5902846 agtcccacttt 5902836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 5890259 - 5890325
Alignment:
Q  30 tgaatcttggtggagtaaaggtattactctttcagggaaaatccatacaaagaaatatacgaggaat 96  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||| ||||||| ||| ||||||    
T  5890259 tgaatcttggtggagtaaaggtattactctttcagggggaattcatactaagaaatctactaggaat 5890325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 5890603 - 5890674
Alignment:
Q  131 atttctccacttaagtgctatttgagaaatcgtttttgtagaagaaccatcttctttgactgcatttgaagc 202  Q
    |||||||||||| ||||||| ||||||||   | ||||||||||||||||||||||||| |||||| |||||    
T  5890603 atttctccacttgagtgctaattgagaaaaaatgtttgtagaagaaccatcttctttgagtgcattagaagc 5890674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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