View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5324_low_1 (Length: 776)
Name: NF5324_low_1
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5324_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 626; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 5 - 757
Target Start/End: Complemental strand, 40049108 - 40048338
Alignment:
| Q |
5 |
cgaataatatcacaagccaatttttgtccnnnnnnngtttatcttacaggtcagttatacattttctataacctctatactgttgattccaactacattt |
104 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40049108 |
cgaataatatcacaagccaatttttgtccaaaaaaagtttatcttacaggtcagttatacattttctataacctctatactgttgattccaactacattt |
40049009 |
T |
|
| Q |
105 |
attgcaatatgatttgagaaacaataatattaatctcatttcaaagttaacggctcaccacataaaaacttcacacaataattcaagtaaccaaaagaga |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40049008 |
attgcaatatgatttgagaaacaataatattaatctcatttcaaagttaacgggtcaccacataaaaacttcacacgataattcaagtaaccaaaagaga |
40048909 |
T |
|
| Q |
205 |
tgcaatgccaataataataa------------gataaaatatccttattcaccatgacagattattgattccaccaaaatcacaactatagaactataac |
292 |
Q |
| |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40048908 |
tgcaataccaataataataataataataataagataaaatatccttattcaccatgacagattattgattccaccaaaatcacaactatagaactataac |
40048809 |
T |
|
| Q |
293 |
attacacctacccatcatttcattggtctctatataaaaccacctctcattactctccaatcaacacatccaacatacaaattaacaaaaaatccaatca |
392 |
Q |
| |
|
||||||||||||||||||||| |||| ||| ||||||| ||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40048808 |
attacacctacccatcatttccttggcctcaatataaatccacctctccttgccatccaatcaacacatccaacatacaaattaacaaaaaatccaatca |
40048709 |
T |
|
| Q |
393 |
tttacgttcctccacaatcttcaatcatcaagccaaatatgaatcaaattatcttttccttctcactctttctactcatgttctcctcattgtattctcc |
492 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40048708 |
tttacattcctccacaatcttcaatcatcaagccaaatatgaatcaaattatcttttccttctcactctttctactcatgttctcctcattgtattctcc |
40048609 |
T |
|
| Q |
493 |
caacacagcagcaacagcgacagcaacagcacc------agcagcgtcaccgaaacatgccccggcaccaaaagcagcgtcaccaacatcgacaaaacca |
586 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40048608 |
caacatagcagcaacagcgacagcaacagcaccagcacaagcagcatcaccgaaacatgccccggcaccaaaagcagcgtcaccaacatcgacaaaacca |
40048509 |
T |
|
| Q |
587 |
ttagtcccgacattaccagacacctcagattccaccccggacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaa |
686 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40048508 |
ttagtcccgacattaccagacacctcagattccaccccggacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaa |
40048409 |
T |
|
| Q |
687 |
gaacaacacaaatcgtggacaacctaaactcacaactcatatcaccaaaaagcggcggattaacaatcttg |
757 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40048408 |
gaacaacacaaatcgtggacaacctaaactcacaactcatatcagcaaaaagcggcggattaacaatcttg |
40048338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 626 - 754
Target Start/End: Original strand, 22056082 - 22056210
Alignment:
| Q |
626 |
gacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaagaacaacacaaatcgtggacaacctaaactcacaactca |
725 |
Q |
| |
|
|||||||| |||| |||||| |||||||||||||||||| | |||||| ||||||||||| ||||||| ||||| || || | ||||||| || |||| |
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| T |
22056082 |
gacgacatcacaacaatccttaaaaaggcgaaaacattctccgtcctaatccgtctcctaaaaacaacagaaatcatgagcagcgtaaactcgcagctca |
22056181 |
T |
|
| Q |
726 |
tatcaccaaaaagcggcggattaacaatc |
754 |
Q |
| |
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| || |||||| |||||| ||||||||| |
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|
| T |
22056182 |
tcacagcaaaaaacggcggcttaacaatc |
22056210 |
T |
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