View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5324_low_11 (Length: 330)
Name: NF5324_low_11
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5324_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 10308291 - 10308603
Alignment:
| Q |
11 |
atcatcagataaaactggacttacctgcaaaaataattcactatctctgtgataagaaaagagagtatcccgattaacatagtacagaccacactcgcta |
110 |
Q |
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| T |
10308291 |
atcatcggataaatctggattcacctgcaaaaataattcactatctttgtgataagaaaagagggtatcccgattgacatagtatagatcgcactcacta |
10308390 |
T |
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| Q |
111 |
catggaggtaacctgatttcatgacaacagaactgtgaatggatataaa-aattggtctcatgttccaagtattaatgaaataagctagaaataacctgc |
209 |
Q |
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| T |
10308391 |
catggaggtaacctgatttcatgacaaaatatcagtagatggagataaagaaatagtctcatgttccaagtaaatatgaaataagttagaaataacctgc |
10308490 |
T |
|
| Q |
210 |
taagattagggatggcatttgaaacatctaagcaaagtaatgtgttgagccagttttcaatgggatccacagaagcatatctgatggattcactcagttc |
309 |
Q |
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| T |
10308491 |
taagattagggatggcatttgaaacatctaagcaaagtagtgtattaagccagctttcaacgggatccccagaagcatatctgatggattcactcagttc |
10308590 |
T |
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| Q |
310 |
aattttcttaaaa |
322 |
Q |
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||||||||||||| |
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| T |
10308591 |
aattttcttaaaa |
10308603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 31 - 321
Target Start/End: Original strand, 38430947 - 38431239
Alignment:
| Q |
31 |
ttacctgcaaaaataattcactatctctgtgataagaaaagagagtatcccgattaacatagtacagaccacactcgctacatggaggtaacctgatttc |
130 |
Q |
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| T |
38430947 |
ttacctgcaaaaataattcactatccttgtggtaggaaaatagagtatcccgattgacatagtatagatcacactcacttgctggaggtaacctgatttc |
38431046 |
T |
|
| Q |
131 |
atgacaacagaactgtgaatggatataaaaat-tggtctcatgttccaagtattaatgaaataagcta-gaaataacctgctaagattagggatggcatt |
228 |
Q |
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| T |
38431047 |
agaataacacaaccgtaaatggggattgaaatatggtctcatattccaaagaagtatgaaatgagctttggtataacctgctaatattagggatggcatt |
38431146 |
T |
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| Q |
229 |
tgaaacatctaagcaaagtaatgtgttgagccagttttcaatgggatccacagaagcatatctgatggattcactcagttcaattttcttaaa |
321 |
Q |
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| T |
38431147 |
tgaaacatctaagcaaagtaatgtgttaagccagctttcaataggatccccaggagcatatctgatggattcactcagttctattttcttaaa |
38431239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 11192115 - 11192033
Alignment:
| Q |
39 |
aaaaataattcactatctctgtgataagaaaagagagtatcccgattaacatagtacagaccacactcgctacatggaggtaa |
121 |
Q |
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| T |
11192115 |
aaaaataattcactatctttgtgataagaaaatagggtatcccgattgacatagtatagatcacactcactacatggaggtaa |
11192033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 11192025 - 11191960
Alignment:
| Q |
257 |
agccagttttcaatgggatccacagaagcatatctgatggattcactcagttcaattttcttaaaa |
322 |
Q |
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| T |
11192025 |
agcctgttgtcaatgtgatccccagaagcatatcttatggattgattcagttgaattttcttaaaa |
11191960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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