View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5324_low_12 (Length: 329)

Name: NF5324_low_12
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5324_low_12
NF5324_low_12
[»] chr3 (1 HSPs)
chr3 (1-297)||(54215845-54216141)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 54216141 - 54215845
Alignment:
Q  1 atgttcatattatcaatctcattgtctcaataccttctttcaatttaccaaaaagtagcttcnnnnnnnnnnnnnnnnnnnnaactttacatttaaagat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||    
T  54216141 atgttcatattatcaatctcattgtctcaataccttctttcaatttaccaaaaagtagcttcttatattatatattattataaactttacatttaaagat 54216042  T
Q  101 attaatagagcttcaaaatgtcttcaaaatagacataagtttgagttggttgtgatgattgcttacaaaatagaaagtaacaggtgtttttgtccagaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54216041 attaatagagcttcaaaatgtcttcaaaatagacataagtttgagttggttgtgatgattgcttacaaaatagaaagtaacaggtgtttttgtccagaaa 54215942  T
Q  201 ctgttgtgatccctcacaaaggatgtctcatgagtaagcctgaatcttctaggatctgaaaattattacacacccatttcagaattgaatatgttat 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54215941 ctgttgtgatccctcacaaaggatgtctcatgagtaagcctgaatcttctaggatctgaaaattattacacacccatttcagaattgaatatgttat 54215845  T

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