View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5324_low_13 (Length: 327)
Name: NF5324_low_13
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5324_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 12039593 - 12039887
Alignment:
| Q |
17 |
aggaacgtagggctgagagcttatgttatatgccaagtgcttgagatcattgccaagaaggaaacaaaacaagctgaaataaaatctacagatatcaaag |
116 |
Q |
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| T |
12039593 |
aggaacgtagggctgagagcttatgttatatgccaagtgcttgagatcattgccaagaaggaaacaaaacaagctgaaataaaatctacagatatcaaag |
12039692 |
T |
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| Q |
117 |
tcagaaggttcttccgaccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaggttacatacaagttattataactaaatg |
216 |
Q |
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| T |
12039693 |
tcagaaggttcttccgaccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaggttacatacaagttattataactaaatg |
12039792 |
T |
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| Q |
217 |
annnnnnnnnnnnnggtactaagtcattcatacttgttctgaattgactttgataagtgacctgacctttgtgtgttcatattgttgttcattgt |
311 |
Q |
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| T |
12039793 |
atttttcattttttggtactaagtcattcatacttgttcagaattgactttgataagtgacctgacctttgtgtgttcatattgttgttcattgt |
12039887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 311
Target Start/End: Complemental strand, 20162816 - 20162522
Alignment:
| Q |
17 |
aggaacgtagggctgagagcttatgttatatgccaagtgcttgagatcattgccaagaaggaaacaaaacaagctgaaataaaatctacagatatcaaag |
116 |
Q |
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| T |
20162816 |
aggaacgtagggctgagagcttatgttatatgccaagtgcttgagatcattgccaagaaggaaacaaaacaagctgaaataaaatctacagatatcaaag |
20162717 |
T |
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| Q |
117 |
tcagaaggttcttccgaccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaggttacatacaagttattataactaaatg |
216 |
Q |
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| T |
20162716 |
tcagaaggttcttccgaccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaagttacatacaagttattataactaaatg |
20162617 |
T |
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| Q |
217 |
annnnnnnnnnnnnggtactaagtcattcatacttgttctgaattgactttgataagtgacctgacctttgtgtgttcatattgttgttcattgt |
311 |
Q |
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| T |
20162616 |
atttttcattttttggtactaagtcattcatacttgttcagaattgactttgataagtgacctgacctttgtgtgttcatattgttgttaattgt |
20162522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 311
Target Start/End: Complemental strand, 24279561 - 24279267
Alignment:
| Q |
17 |
aggaacgtagggctgagagcttatgttatatgccaagtgcttgagatcattgccaagaaggaaacaaaacaagctgaaataaaatctacagatatcaaag |
116 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24279561 |
aggaatgtagggctgagagcttatgttatatgccaagtgcttgagatcattgcaaagaaggaaacaaaacaagctgaaataaaatctacagatatcaaag |
24279462 |
T |
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| Q |
117 |
tcagaaggttcttccgaccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaggttacatacaagttattataactaaatg |
216 |
Q |
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| T |
24279461 |
taagaaggttcttccgaccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaagttacatacaagttattataacttcatg |
24279362 |
T |
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| Q |
217 |
annnnnnnnnnnnnggtactaagtcattcatacttgttctgaattgactttgataagtgacctgacctttgtgtgttcatattgttgttcattgt |
311 |
Q |
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| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| |
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| T |
24279361 |
atttttctttttttggtactaagtcatttatacttgttctgaattgactttgataagtgacctgatctttatgtgttcattttgttgttcattgt |
24279267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 20 - 311
Target Start/End: Complemental strand, 8052333 - 8052041
Alignment:
| Q |
20 |
aacgtagggctgagagcttatgttatatgccaagtgcttgagatcattgccaagaaggaaacaaaacaagctgaaataaaatctacagatatcaaagtca |
119 |
Q |
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|||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| |
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| T |
8052333 |
aacgtaggattgaaagcttatgttatatgccaagtgctcgagatcattgccaagaaggaaacaaaacaagctgaaataacatctagagagatcaaagtca |
8052234 |
T |
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| Q |
120 |
gaaggttcttccgaccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaggttac--atacaagttattataactaaatga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| ||||| |||||||||||||||||| ||||| |
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| T |
8052233 |
gaaggttcttccgaccggaagatgtatcaagtgagaaggcatattgttctgatgtacacgaggtaaaaagttacatatacaagttattataacttaatga |
8052134 |
T |
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| Q |
218 |
nnnnnnnnnnnnnggtactaagtcattcatacttgttctgaattgactttgataagtgacctgacctttgtgtgttcatattgttgttcattgt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
8052133 |
-ttttttatttttggtactaagtcattcatacttgttctgaattgactttgataagtgacctgatctttgtgcgttcatattgttgttcattgt |
8052041 |
T |
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