View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5324_low_2 (Length: 545)
Name: NF5324_low_2
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5324_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 4 - 527
Target Start/End: Original strand, 3424683 - 3425207
Alignment:
| Q |
4 |
atgtccaagaatatcgacacatgtgattacatttaattatatcannnnnnnncaaatactactagtgttcgtattgtgctagtgttttgtagattactat |
103 |
Q |
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| T |
3424683 |
atgtccaacaagatcgacacatgtgattacatttaattatatcattttttt-caaatactactagtgttcgtattgtgctagtgttttgtagattactat |
3424781 |
T |
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| Q |
104 |
attttagttgttaaattaatataatatactcctttgtttgagtttgaaccaggacctcaaactccttaaccttgactcaaataagtggagctatccaacc |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3424782 |
--tttagttgttaaattaatataatatactcctttgtttgagtttgaaccaggacctcacactccttaaccttgactcaaataagtggagctatccaacc |
3424879 |
T |
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| Q |
204 |
ccatagcatgaaatcaaagggtaaacacttattttgtttcctaaatgtgtcttatgt----aattttagtgatcaaattgactagcagaagacacgttcg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||| |
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| T |
3424880 |
ccatagcatgaaatcaaagggtaaacacttattttgtttcctaaatgtgtcttatgttagtaattttagtgatcaaattgactagcggaagacacattca |
3424979 |
T |
|
| Q |
300 |
attgacaaactaattaacaaaagacacaaccaaactggcttatgaaagatgtatatatttctgtaagttttgatatattcaaaacctattgtcgcaacac |
399 |
Q |
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| T |
3424980 |
attgacaaactaattaacaaaagacacaaccaaactggcttatgaaagatgtatatatttctgtaagttttgatatattcaaaacctattgtcgcaacac |
3425079 |
T |
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| Q |
400 |
cacaacgtttaagagccaaagggattgtttaatccgcaatcaatttgaaaatttcaggaatttttatttcagctatgttgtcaatagcacgctatagcgg |
499 |
Q |
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| T |
3425080 |
cacaacgtttaagagccaaagggattgtttaatccgcaatcaatttgaaaatttcaggaatttttatttcagctatgttgccaatagcacgctatagcgg |
3425179 |
T |
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| Q |
500 |
tgtagtttggcggcgctgccctccactt |
527 |
Q |
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| T |
3425180 |
tgtagtttggcagcgctgccctccactt |
3425207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 510
Target Start/End: Complemental strand, 9832993 - 9832953
Alignment:
| Q |
470 |
agctatgttgtcaatagcacgctatagcggtgtagtttggc |
510 |
Q |
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| T |
9832993 |
agctatgttgtcaatagcacactatagcggtgtagtgtggc |
9832953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 38487776 - 38487836
Alignment:
| Q |
146 |
tttgaaccaggacctcaaactccttaa-ccttgactcaaataagtggagctatccaacccc |
205 |
Q |
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|||||||||||||||| | |||||||| |||| |||||||| ||| |||||| |||||||| |
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| T |
38487776 |
tttgaaccaggacctccatctccttaacccttaactcaaatcagttgagctacccaacccc |
38487836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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