View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5324_low_22 (Length: 240)
Name: NF5324_low_22
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5324_low_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 26454753 - 26454962
Alignment:
| Q |
14 |
catcatcaacgttcaccatgttgcatttctcattcttgggattatcacatccacaaaaccttcatgaggagtggccgggattttggttgacaaatggcca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26454753 |
catcatcaacgttcaccatgttgcatttctcattcttgggattatcacatccacaaaaccttcatgaggagtggccgggattttggttgacaaatggcca |
26454852 |
T |
|
| Q |
114 |
atttgtatctcattcttgatacaagcttctttgttcgtttgagttgtttcttggctcaccttcagctccttaagattgttttgtgtggatttcatgaact |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26454853 |
atttgtatctcattcttgatacaagcttctttgttcttttgagttgtttcttggctcaccttcagctccttaagattgttttgtgtggatttcatgaact |
26454952 |
T |
|
| Q |
214 |
tgcccataat |
223 |
Q |
| |
|
|||||||||| |
|
|
| T |
26454953 |
tgcccataat |
26454962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University