View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5324_low_24 (Length: 206)
Name: NF5324_low_24
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5324_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 13396698 - 13396522
Alignment:
| Q |
11 |
tagcaaaggagagataaaagtagaagaatatgtagctgttgactttgctagtgaggttgatcagcgaagaagttctattggttatatatttattgttggc |
110 |
Q |
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| T |
13396698 |
tagcaaaggagagataaaagtagaagaatatgtagttgttgactttgctagtgaggttgatcagcgaagaagttctattggttatatatttattgttggc |
13396599 |
T |
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| Q |
111 |
agtggaatggaatcgaagatcagcacatgtcggatattagaacacacctaatttgaagaatgtctctaattccatag |
187 |
Q |
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| T |
13396598 |
agtggagtgaaatcgaagatcaacacatgtcggatattagaacacacctaatttgaagaatgtccgcaattccatag |
13396522 |
T |
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Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 19944784 - 19944880
Alignment:
| Q |
13 |
gcaaaggagagataaaagtagaagaatatgtagctgttgactttgctagtgaggttgatcagcgaagaagttctattggttatatatttattgttgg |
109 |
Q |
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| T |
19944784 |
gcaaaggagagataaaagtagaaggctatgtagatgcagactttgctggtgaggttgatcaccgaagaagtacaactggatatatatttactgttgg |
19944880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 8273801 - 8273890
Alignment:
| Q |
13 |
gcaaaggagagataaaagtagaagaatatgtagctgttgactttgctagtgaggttgatcagcgaagaagttctattggttatatattta |
102 |
Q |
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| T |
8273801 |
gcaaaggagagataaaagtagaaggctatgtagatgcagactttgctggtgaggttgatcaccgaagaagtacaactggatatatattta |
8273890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 795987 - 795891
Alignment:
| Q |
13 |
gcaaaggagagataaaagtagaagaatatgtagctgttgactttgctagtgaggttgatcagcgaagaagttctattggttatatatttattgttgg |
109 |
Q |
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|||||||||||||||||||||||| ||||||| || |||||||| ||||||||||||| ||||||||| | | ||| |||||||||| |||||| |
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| T |
795987 |
gcaaaggagagataaaagtagaaggctatgtagatgcagactttgccggtgaggttgatcaccgaagaagtacaactggatatatatttactgttgg |
795891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 6692834 - 6692930
Alignment:
| Q |
13 |
gcaaaggagagataaaagtagaagaatatgtagctgttgactttgctagtgaggttgatcagcgaagaagttctattggttatatatttattgttgg |
109 |
Q |
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|||||||||||||||||||||||| ||||||| || |||||||| ||||||||||||| ||||||||| | | ||| |||||||||| |||||| |
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| T |
6692834 |
gcaaaggagagataaaagtagaaggctatgtagatgcagactttgccggtgaggttgatcaccgaagaagtacaactggatatatatttactgttgg |
6692930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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