View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5324_low_4 (Length: 450)
Name: NF5324_low_4
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5324_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 34695149 - 34694717
Alignment:
| Q |
1 |
accaaaattaagttgtgggtcttgttgatgcatatgcatcatatgaatcgactcctcttgaatattctcttgatcaaaaaggtcattgattgagcagatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34695149 |
accaaaattaagttgtgggtcttgttgatgcatatgcatcatatgaatcgactcctcttgaatattctcttgatcaaaaaggtcattgattgagcagatt |
34695050 |
T |
|
| Q |
101 |
ccatttttgtttccatagttcatgatgttatcataattaagtagaggcagatcaacattttcttgaggtaaagattgactcatatttggaaaaccagaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34695049 |
ccatttttgtttccatagttcatgatgttatcataattaagtagaggcagatcaacattttcttgaggtaaagattgactcatatttggaaaaccagaga |
34694950 |
T |
|
| Q |
201 |
agtaattaaacccctctggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtgtaggtagttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34694949 |
agtaattaaacccctctggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtgtaggtagttg |
34694850 |
T |
|
| Q |
301 |
tagaccggttccagtgagggtgtgaggataagtatcatcttgattttggttcagagatattgcgggtgaattaggcaccatcacggtcccatcattaata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34694849 |
tagaccggttccagtgagggtgtgaggataagtatcatcttgattttggttcagagatattgcgggtgaattaggcaccatcaccatcccatcattaata |
34694750 |
T |
|
| Q |
401 |
ttggagattcc---aatattgttagaggaagat |
430 |
Q |
| |
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||||||||||| ||||||||||||||||||| |
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| T |
34694749 |
ttggagattccaataatattgttagaggaagat |
34694717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 34687223 - 34686791
Alignment:
| Q |
1 |
accaaaattaagttgtgggtcttgttgatgcatatgcatcatatgaatcgactcctcttgaatattctcttgatcaaaaaggtcattgattgagcagatt |
100 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| |||||||||| |||| |||||||||||||||||||||| |||||| |||| || |||| ||||| |
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| T |
34687223 |
accaaaattaaattgtgggtcttgttggtgcatgtgcatcatattcatcgcttcctcttgaatattctcttgataaaaaagatcatggactgagtagatt |
34687124 |
T |
|
| Q |
101 |
ccatttttgtttccatagttcatgatgttatcataattaagtagaggcagatcaacattttcttgaggtaaagattgactcatatttggaaaaccagaga |
200 |
Q |
| |
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||||||| ||| ||| ||||||||||||||||||||| || ||||||||||||||||||| ||||||| | | || | ||||||| || ||| |||||| |
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| T |
34687123 |
ccattttcattttcattgttcatgatgttatcataattcagcagaggcagatcaacattttgttgaggtgagggttcaatcatattcgggaaatcagaga |
34687024 |
T |
|
| Q |
201 |
agtaattaaacccctctggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtgtaggtagttg |
300 |
Q |
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|||||||| |||||||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
34687023 |
agtaattagacccctctagtgttgtcatgtcattaagcactaccctttcattaatatgattctcaaccgggaaagagggaaatgggggtgtaggtagttg |
34686924 |
T |
|
| Q |
301 |
tagaccggttccagtgagggtgtgaggataagtatcatcttgattttggttcagagatattgcgggtgaattaggcaccatcacggtcccatcattaata |
400 |
Q |
| |
|
|||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
34686923 |
tagaccggtttcagcgagggtgtcaggataagtatcatcttggttttggttcagagagattgcaggtgaattaggcaccatcaccgtcccatcattaata |
34686824 |
T |
|
| Q |
401 |
ttggagattcc---aatattgttagaggaagat |
430 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
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|
| T |
34686823 |
ttggagattccaataatattgttagaggaagat |
34686791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 191 - 420
Target Start/End: Complemental strand, 8284906 - 8284680
Alignment:
| Q |
191 |
aaaccagagaagtaattaaacccctctggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtg |
290 |
Q |
| |
|
|||||||| |||| |||||||| | ||| | | ||||| ||||| ||||||| || |||||||||||||| || ||||||||| |||||||||||| |
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|
| T |
8284906 |
aaaccagataagtgattaaacctatgtggtggtgtcatggcattaggcactac---ttcattaatatgattctgcacagggaaagagaaaaatgggggtg |
8284810 |
T |
|
| Q |
291 |
taggtagttgtagaccggttccagtgagggtgtgaggataagtatcatcttgattttggttcagagatattgcgggtgaattaggcaccatcacggtccc |
390 |
Q |
| |
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|||||||||||| | |||||||||| |||| ||| ||||| |||| |||| |||||||||| || | |||||||||||||| | || ||| |||| |
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|
| T |
8284809 |
taggtagttgtaaatcggttccagtaggggtttgaaaataagcatcaacttggttttggttcaccgagactgcgggtgaattagaaaacaccaccatccc |
8284710 |
T |
|
| Q |
391 |
atcattaatattggagattccaatattgtt |
420 |
Q |
| |
|
||||||| |||||||| ||| |||||||| |
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|
| T |
8284709 |
atcattagcattggagaatccgatattgtt |
8284680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 8285123 - 8284953
Alignment:
| Q |
1 |
accaaaattaagttgtgggtcttgttgatgcatatgcatcatatgaatcgactcctcttgaatattctcttgatcaaaaaggtcattgattgagcagatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| || | ||| || ||||||| || | ||||||||||| |||||||||||| | ||| ||| |||||| ||| |
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|
| T |
8285123 |
accaaaattaagttgtgggtcttgctggtacatgtgaatcatattcattgcttcctcttgaatcttctcttgatcatatcggtgattcattgaggcaatt |
8285024 |
T |
|
| Q |
101 |
ccatttttgtttccatagttcatgatgttatcataattaagtagaggcagatcaacattttcttgaggtaa |
171 |
Q |
| |
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||| |||| |||||||||||||| || | |||| ||||| |||||| | ||||||||| | ||||||||| |
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|
| T |
8285023 |
ccacttttacttccatagttcatggtgatctcatgattaactagaggtacatcaacattctgttgaggtaa |
8284953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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