View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5324_low_5 (Length: 429)
Name: NF5324_low_5
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5324_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 411
Target Start/End: Complemental strand, 3570909 - 3570515
Alignment:
| Q |
16 |
atcactttttaatccgtctcgataattttaatttctaacatacattttggcaatttaatttgcttcctaggtttctggtggaagaaattatccagaaata |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3570909 |
atcactttttaatccgtctcgataattttaatttctaacatacattttggcaatttaatttgcttcctaggtttctggtggaagaaattatccagaaata |
3570810 |
T |
|
| Q |
116 |
acttcagatgtttcattcatggaggaggaaaagaataagatgttggagatattacacaagataaaaggtgaaatgaaaattgaaaagcaagatcagttgt |
215 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3570809 |
acttcagatgtttcactcatggcggaggaaaagaataagatgttggagatattacacaagatagaaggtgaaatgaaaattgaaaagcaagatcagttgt |
3570710 |
T |
|
| Q |
216 |
tctgttttttattacatgaatgcataaaggacttatcctcctgcctaaatagttaatatatgtannnnnnnnnnnnnnngaagttacaatgaaatatgtg |
315 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3570709 |
tctgtttttgattacatgaatgcataaaggacttatcctcctgcctaaatagttaatatatgta-ttttttttttttttgaagttacaatgaaatatgtg |
3570611 |
T |
|
| Q |
316 |
aattcataaaaataattacattttgtagctgcgagactacaaacatatccctcttacatgtgaaaggttcacgttagaatttgcatggagattatt |
411 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3570610 |
aattcataaaaataattatattttgtagctgcgagactacaaacatatccctcttacatgtgaaaggttcacgttagaatttgcatggagattatt |
3570515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 1685613 - 1685425
Alignment:
| Q |
16 |
atcactttttaatccgtctcgataattttaatttc-taacatacattttggcaatttaatttgcttcctaggtttctggtggaagaaattatccagaaat |
114 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||||||| |||| |||| ||||||||||| | ||||||||||||||| ||| |
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| T |
1685613 |
atcactttttaacccgtctcgataattttaatttcctaacatacattttggttattttatttacttcctaggttgccggtggaagaaattat-----aat |
1685519 |
T |
|
| Q |
115 |
aacttcagatgtttcattcatggaggaggaaaagaataagatgttggagatattacacaagataaaaggtgaaatgaaaattgaaaagcaagatca |
210 |
Q |
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||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| |
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| T |
1685518 |
aacttca--tgtttcattcatggagaaggaagagaataagatgttggagatattacacaagatagaaggtgaaaggaaaatcgaaaagcaagatca |
1685425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 118 - 278
Target Start/End: Complemental strand, 3572845 - 3572685
Alignment:
| Q |
118 |
ttcagatgtttcattcatggaggaggaaaagaataagatgttggagatattacacaagataaaaggtgaaatgaaaattgaaaagcaagatcagttgttc |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| | ||||||||| |||||| ||||||||| |||||||||||||||| |||| |||||| |
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| T |
3572845 |
ttcagatgtttcattcatgaaggaggaaaagaataagatgttagggatattacaaaagatagaaggtgaaaggaaaattgaaaagcaaaatcaattgttc |
3572746 |
T |
|
| Q |
218 |
tgttttttattacatgaatgcataaaggacttatcctcctgcctaaatagttaatatatgt |
278 |
Q |
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|| |||| |||||||| |||||||||||||| ||||||||||| ||||||||||| ||||| |
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| T |
3572745 |
tgattttgattacatgtatgcataaaggactaatcctcctgcccaaatagttaatttatgt |
3572685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 50 - 255
Target Start/End: Complemental strand, 3560257 - 3560051
Alignment:
| Q |
50 |
ctaacatacattttggcaatttaatttgcttcctaggtttctggtggaagaaattatccagaaataacttcag---atgtttcattcatggaggaggaaa |
146 |
Q |
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||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||| ||||||| | |||||||||||||||||||||| |
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| T |
3560257 |
ctaacatacattttggctattttatttgcttcctaggttgctggtggaagaaattatccagaac-aacttcaatataagtttcattcatggaggaggaaa |
3560159 |
T |
|
| Q |
147 |
agaataagatgttggagatattacacaagataaaaggtgaaatgaaaattgaaaagcaagatcagttgttctgttttttattacatgaatgcataaagga |
246 |
Q |
| |
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|||||||||||||||||||| ||||||||||| ||||| ||| || ||| | |||||||||||| | | || |||| |||||||| |||||||||||| |
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| T |
3560158 |
agaataagatgttggagatactacacaagatagaaggtaaaaggacaatcgcaaagcaagatcaagggct-tgcttttgattacatgtatgcataaagga |
3560060 |
T |
|
| Q |
247 |
cttatcctc |
255 |
Q |
| |
|
|| |||||| |
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|
| T |
3560059 |
ctaatcctc |
3560051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 373
Target Start/End: Complemental strand, 3560050 - 3559977
Alignment:
| Q |
299 |
ttacaatgaaatatgtgaattcataaaaataattacattttgtagctgcgagactacaaacatatccctcttaca |
373 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||||| | |||||| ||||||||||||||||| |
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| T |
3560050 |
ttacaatgaaacatgtgaattcataaaaataatcacattttgtagctccatgactac-aacatatccctcttaca |
3559977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 257
Target Start/End: Complemental strand, 3551144 - 3551030
Alignment:
| Q |
143 |
gaaaagaataagatgttggagatattacacaagataaaaggtgaaatgaaaattgaaaagcaagatcagttgttctgttttttattacatgaatgcataa |
242 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||| |||| || |||||| |||||| |||||||||| | ||||||| ||| |||||||| |||||||| |
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| T |
3551144 |
gaaaacaataaaatgttggggatattacacaggatagaaagtgaaaggaaaatccaaaagcaagaataactgttctgggtttgattacatgtatgcataa |
3551045 |
T |
|
| Q |
243 |
aggacttatcctcct |
257 |
Q |
| |
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|||| | |||||||| |
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| T |
3551044 |
aggattaatcctcct |
3551030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 3574243 - 3574144
Alignment:
| Q |
118 |
ttcagatgtttcattcatggaggaggaaaagaataagatgttggagatattacacaagataaaaggtgaaatgaaaattgaaaagcaagatcagttgttc |
217 |
Q |
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|||||||| |||||||||||| |||||||| |||||||||||||||||||| |||| |||| ||| |||||| |||||||||||| ||||| |
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| T |
3574243 |
ttcagatgcttcattcatggaagaggaaaac-----gatgttggagatattacacaggatagaaggagaatggaaaatcctaaagcaagatcaattgttt |
3574149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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