View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5324_low_6 (Length: 367)
Name: NF5324_low_6
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5324_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 3 - 348
Target Start/End: Complemental strand, 6276180 - 6275835
Alignment:
| Q |
3 |
gtgattctttcaaatatgacaaattatatggaagactacttaaataaaaggtcaatggtagattgatactttttcctgcatacaatagaaatataatata |
102 |
Q |
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| T |
6276180 |
gtgattctttcaaatatgacaaattctatggaagactattttaataaaaggtcaatgatagattgatactttttcctgcctacaattgaaatgtaatgtt |
6276081 |
T |
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| Q |
103 |
agaacatgtcacatactaaaatgataatgaccaagcacatacattcaatttcaacattctaaatgaaaacgttttcacaagaacttaagatgatttagag |
202 |
Q |
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| T |
6276080 |
agaacatgtcacataataaaatgataatgaccaagcacatacattcaatttcaatattctaaatgaaaatgttttcacaagaacttaagatgatttatag |
6275981 |
T |
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| Q |
203 |
gatggtgaag-aaacctgttgatgtagaacaacttctatttagaagattcaaaacttggccaacacatgccttagaggcaaattctacgaccgtgggcta |
301 |
Q |
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| T |
6275980 |
ggtggtgaagaaaacctgatgatgtagaataccttctattaagaagattcaaaacttgaccaacacatgtcttagagtcaaattctacgactgtgggcta |
6275881 |
T |
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| Q |
302 |
ctacccgaacattgtcgaaaagtagaagtttatggtcctcgtcattt |
348 |
Q |
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| T |
6275880 |
cta-ccgaacattgtcgaaaagtagaagtttacggtccttgtcattt |
6275835 |
T |
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