View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5324_low_7 (Length: 365)
Name: NF5324_low_7
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5324_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 66 - 347
Target Start/End: Original strand, 54216139 - 54216420
Alignment:
| Q |
66 |
catcacatcttactagtcttttcatgtttttgcttcaatcagtaatatgtttttgaacaattttcaggtatgcttctttcgacagttcttaagatcggtt |
165 |
Q |
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| T |
54216139 |
catcacatcttactagtcttttcatgtttttgcttcaatcagtaatatgtttttgaacaattttcaggtatgcttctttcgacagttcttaagatcggtt |
54216238 |
T |
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| Q |
166 |
cgaagggcagactacttaacaatgcgacatggatttgtttctgttagtggcttatcaaatgaaatgtccatttcatgcttgtagtatttgtgttcttaat |
265 |
Q |
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| T |
54216239 |
cgaagggcagactacttaacaatgcgacatggatttgtttctgttagtggcttatcaaatgaaatgtccatttcatgcttgtagtatttgtgttcttaat |
54216338 |
T |
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| Q |
266 |
agataaacctgtgtctccattcaaatttgtaggtccatttagcacctggaagtaagtttgattttcaaaaatatatcaagag |
347 |
Q |
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| T |
54216339 |
agataaacttgtgtctccattcaaatttgtaggtccatttagcacctggaagtaagtttgattttcaaaaatatatcaagag |
54216420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 54216118 - 54216153
Alignment:
| Q |
10 |
caatgagattgataatatgaacatcacatcttacta |
45 |
Q |
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| T |
54216118 |
caatgagattgataatatgaacatcacatcttacta |
54216153 |
T |
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