View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5324_low_9 (Length: 358)
Name: NF5324_low_9
Description: NF5324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5324_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 29586189 - 29586362
Alignment:
| Q |
10 |
catcatcagaaaatgaccttgaatacaaaaggccttatttgattgacgaataaggcatatatgcaatctagcatctgaaccaattcaatgtcatgagatc |
109 |
Q |
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| T |
29586189 |
catcctcagaaaatgaccttgaatacaaaaggccttatttgattgacgaataaggcatttatgcaatctagcatctgaaccaattcaatgtcatgagatc |
29586288 |
T |
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| Q |
110 |
ctgaaagcggacatctgtgattcggagtccttctatacctggtaactggtgccctcaacgagacaatattctaa |
183 |
Q |
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| T |
29586289 |
ctgaaagaggacatctgtgattcggagtccttctatacctggtaactggtgccctcaacgagacaatattctaa |
29586362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 282
Target Start/End: Original strand, 29580582 - 29580664
Alignment:
| Q |
200 |
ccagatatctgaatcacaagtgtatggatattttcagcaactatgtttataattccagctccattaaacaggattacaagttc |
282 |
Q |
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| T |
29580582 |
ccagatatcagaatcacaagtgttgggattttatcagaaactatgtctacaattccagctccattaaatgggatcacaagttc |
29580664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 282
Target Start/End: Complemental strand, 29613532 - 29613450
Alignment:
| Q |
200 |
ccagatatctgaatcacaagtgtatggatattttcagcaactatgtttataattccagctccattaaacaggattacaagttc |
282 |
Q |
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|||||||| ||||||||||||| |||| || ||||||| ||||| || |||||||||||||||||| |||| |||||||| |
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| T |
29613532 |
ccagatattagaatcacaagtgttgggattttatcagcaattatgtctacaattccagctccattaaatgggatcacaagttc |
29613450 |
T |
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