View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5325-Insertion-2 (Length: 995)
Name: NF5325-Insertion-2
Description: NF5325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5325-Insertion-2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 545; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 291 - 990
Target Start/End: Complemental strand, 39188848 - 39188159
Alignment:
| Q |
291 |
tttgtgatacctaaatttttaataccttgttgattgtgtgcacatgaagtctctacatatggtcatatatttccattgcaataaggtgtaacataattga |
390 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39188848 |
tttgtgatacccaaatttttaataccttgttgattgtgtgcacatgaagtgtctacatatagtcatatatttgcattgcaataaggtgtaacataattga |
39188749 |
T |
|
| Q |
391 |
tttcaaatgttatatttgtggtctcattacaattgtttaacttggcaatgatttcatgattcaactcaaaataagtctaaaacatgtatgacataatgtg |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39188748 |
tttcaaatgttatatttgtggtctcattacaattgtttgacttggcaatgatttcatgattcaactcaaaataagtctaaaacatgtatgacataatct- |
39188650 |
T |
|
| Q |
491 |
ttttgataggacaaannnnnnngtctaaaactatgtatcatcctttccaatcaatagttttcaagcatgtagttttaattattatcgtatatttttcact |
590 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39188649 |
------taggacaattttttttgtctaaaactatgtatcatcctttccaatcaatagttttcaagcatgtagttttaattattatcgtatatttttcatt |
39188556 |
T |
|
| Q |
591 |
tttttacttatcttaaacaaagtgattatcctcacatannnnnnnnnnnnnactcagacaagtaccagcacccagcactcattattgttgatgcggtgtc |
690 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39188555 |
tttttacttatcttaaacaaagtgattatcctcactt-----tttttttttactcagacaagtaccagcacccagcactcattattgttgatgcggtgtc |
39188461 |
T |
|
| Q |
691 |
ttcaatcggcgctcttgatttccgcatggatgaatggggtgtagatgtggtagtgacgagttctcagaaagctctttctcttcctacaggaatgggaatt |
790 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39188460 |
ttcaatcggcgctcttgatttccgcatggatgaatggggtgtagatgtggtagtgacgagttctcagaaagctctttctcttcctacaggaatgggaatt |
39188361 |
T |
|
| Q |
791 |
gtatgtgcaggtcctaaagccattgaggctacaaaatctgctacatcagttagatctttctttgattggaatggttacttgaaatgctacaacctgggaa |
890 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39188360 |
gtatgtgcaggtcctaaagccattgaggctacaaaatctgctacatcagttagatctttctttgattggaatggttacttgaaatgctacaacttgggaa |
39188261 |
T |
|
| Q |
891 |
cttattggccatacactccttccattcaattgctctatggtctaagggcagcccttgacttagtttttgaggaaggatt--gaaatgtgattttaaggca |
988 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39188260 |
cttattggccatacactccttccattcagttgctctatggtctaagggcagcccttgacttggtttttgaggaaggatttgaaaatgtgattttaaggca |
39188161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 312 - 990
Target Start/End: Original strand, 41261333 - 41262009
Alignment:
| Q |
312 |
ataccttgttgattgtgtgcacatgaagtctctacatatggtcatatatttccattgcaataaggtgtaacataattgatttcaaatgttatatttgtgg |
411 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||| ||| ||||||| ||| |||||||||||||||| | ||||||||||||||||| ||||||| || |
|
|
| T |
41261333 |
ataccttgtggattgtgtgcacatgaagtgtctacgtatagtcatat-tttgcattgcaataaggtgtgatataattgatttcaaatgctatatttcggg |
41261431 |
T |
|
| Q |
412 |
tctcattacaattgtttaacttggcaatgatttcatgattcaactcaaaataagtctaaaacatgtatgacataatgtgttttgataggacaaannnnnn |
511 |
Q |
| |
|
|||||||||| ||| || ||||| | |||||||||||||||||||| |||||||||||||| ||| | |||||||||||| || |||||||| |
|
|
| T |
41261432 |
tctcattacatttggttgacttgactatgatttcatgattcaactcgaaataagtctaaaatatgcacgacataatgtgtcttcttaggacaattttttt |
41261531 |
T |
|
| Q |
512 |
ngtctaaaactatgtatcatccttt-ccaatcaatagttttcaagcatgtagttttaattattatcgtatatttttcacttttttacttatcttaaacaa |
610 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | ||||||| |||| |
|
|
| T |
41261532 |
ggtctaaaactatgtatcattcttttccaatcaatagttttcaagcatgtagttttaattattattgtatatttttcacttgttaatatatcttacacaa |
41261631 |
T |
|
| Q |
611 |
agtgattatcctcacatannnnnnnnnnnnnactcagacaagtaccagcacccagcactcattattgttgatgcggtgtcttcaatcggcgctcttgatt |
710 |
Q |
| |
|
||||||||||| ||| | |||| ||||||||||||||||||||||||||||||| ||||| |||| ||| ||||| |||||||||| |
|
|
| T |
41261632 |
agtgattatccccacgt----tatgtttttgactcggacaagtaccagcacccagcactcattattggagatgctgtgttttcgatcggtgctcttgatt |
41261727 |
T |
|
| Q |
711 |
tccgcatggatgaatggggtgtagatgtggtagtgacgagttctcagaaagctctttctcttcctacaggaatgggaattgtatgtgcaggtcctaaagc |
810 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41261728 |
ttcgcatggatgaatggggtgtagacgtggtagtgactagctctcagaaagctctttctctccctacaggaatgggaattgtatgtgcaggacctaaagc |
41261827 |
T |
|
| Q |
811 |
cattgaggctacaaaatctgctacatcagttagatctttctttgattggaatggttacttgaaatgctacaacctgggaacttattggccatacactcct |
910 |
Q |
| |
|
||| || ||| | ||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41261828 |
catcgaagcttcgaaatctgcttgatcacttagatctttctttgattagaatggttacttgaaatgctacaacttgggaacttattggccatacactcct |
41261927 |
T |
|
| Q |
911 |
tccattcaattgctctatggtctaagggcagcccttgacttagtttttgaggaaggatt--gaaatgtgattttaaggcaca |
990 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41261928 |
tccattccattgctctatggtctaagggcagcccttgacttgatttttgaggaaggatttgaaaatgtgattttaaggcaca |
41262009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 465 - 990
Target Start/End: Complemental strand, 28459633 - 28459101
Alignment:
| Q |
465 |
gtctaaaacatgtatgacataatgtgttttgataggacaaannnnnnn---gtctaaaactatgtatcatccttt-ccaatcaatagttttcaagcatgt |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |||||||||||||||| ||||||| |
|
|
| T |
28459633 |
gtctaaaacatgtatgacataatgtgttttcttaggacaagttttttttttgtctaaaactatgtatcattcttttccaatcaatagttttctagcatgt |
28459534 |
T |
|
| Q |
561 |
agttttaattattatcgtatatt-tttcacttttttacttatcttaaacaaagtgattatcctcacatannnnnnnnnnnnnactcagacaagtaccagc |
659 |
Q |
| |
|
||||||||||||||| ||| | |||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
28459533 |
agttttaattattattgtaaaaaatttcacttttttacttctcttaaacaaagtgactatcctcacattatgttttttttttactcagacaagtaccagc |
28459434 |
T |
|
| Q |
660 |
acccagcactcattattgttgatgcggtgtcttcaatcggcgctcttgatttccgcatggatgaatggggtgtagatgtggtagtgacgagttctcagaa |
759 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |
|
|
| T |
28459433 |
acccatcactcattattgttgatgctgtgtcttccattggtgctcttgatttccgcatggatgaatggggtgtagacgtggtagtgactagctctcagaa |
28459334 |
T |
|
| Q |
760 |
agctctttctcttcctacaggaatgggaattgtatgtgcaggtcctaaagccattgaggctacaaaatctgctacatcagttagatctttctttgattgg |
859 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28459333 |
agctctttctctttctacaggaatgggaattgtatgtgcaggacctaaagccattgaggcttcaaaatctgctacatcacttagatctttctttgattgg |
28459234 |
T |
|
| Q |
860 |
aatggttacttgaaatgctacaacctgggaacttattggccatacactccttccattcaattgctctatggtctaagggcagcccttgacttagtttttg |
959 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
28459233 |
aatggttacttgaaatgctacaacttgggaacttattggccatacactccttccattcagttgctctatggtctaagagcagcccttgacttggtttttg |
28459134 |
T |
|
| Q |
960 |
aggaaggatt--gaaatgtgattttaaggcaca |
990 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |
|
|
| T |
28459133 |
aggaaggatttgaaaatgtgattttaaggcaca |
28459101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 39189122 - 39188936
Alignment:
| Q |
8 |
aaaacacataccataaaggcaatttgtattgttcacaatgagacaacaacaggggtcacaaatgacttgactaaagtgagaaaaatccttggtgagaatc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39189122 |
aaaacacataccataaaggcaatttgtattgttcacaatgagacaacaacaggggtcacaaatgacttgactaaagtgagaaaaatccttggtgagaata |
39189023 |
T |
|
| Q |
108 |
cttctaattatgattgctattaaattattatgtaatattttagtcatcatcgtaactttgcatgtttatgtcttgagagatatttga |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39189022 |
cttctaattatgattgctattaaattattatgtaatattttagtcatcatcataactttgcatgtttatatcttgagagatatttga |
39188936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 41261037 - 41261212
Alignment:
| Q |
14 |
cataccataaaggcaatttgtattgttcacaatgagacaacaacaggggtcacaaatgacttgactaaagtgagaaaaatccttggtgagaatccttcta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41261037 |
cataccataaaggcaatttgtattgttcacaatgagacaacaacaggggtcacaaataacttgactaaagtgagaaaaatccttggtgagaatccctc-- |
41261134 |
T |
|
| Q |
114 |
attatgattgctattaaattattatgtaatattttagtcatcatcgtaactttgcatgtttatgtcttgagagatatttga |
194 |
Q |
| |
|
|||| | ||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41261135 |
---atgacttttattaaattattatgtagtattttagtcatgatcataactttgcatgtttatgtattgagagatatttga |
41261212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 28460080 - 28459890
Alignment:
| Q |
8 |
aaaacacataccataaaggcaatttgtattgttcacaatgagacaacaacaggggtcacaaatgacttgactaaagtgagaaaaatccttggtgagaatc |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
28460080 |
aaaacacataccataaaagcaatttgtattgttcataatgagacaacaaca-tggtcacaaatgacttgacgaaagtgagaaaaatcctcggtgataatc |
28459982 |
T |
|
| Q |
108 |
c-ttctaattatgattgctattaaattattatgt--aatattttagtcatcatcgtaactt--tgcatgtttatgtcttgagagatatttga |
194 |
Q |
| |
|
| || ||||||||| || |||| |||||||| || |||| || ||||||||| |||||| || |||||||| ||| |||||||||||| |
|
|
| T |
28459981 |
cgttttaattatgactgttattcaattattaagttatatatatttgtcatcatcataactttgtgtatgtttatatctatagagatatttga |
28459890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 364 - 444
Target Start/End: Complemental strand, 28459714 - 28459634
Alignment:
| Q |
364 |
cattgcaataaggtgtaacataattgatttcaaatgttatatttgtggtctcattacaattgtttaacttggcaatgattt |
444 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||| ||||||| |||||||||||| |||||| |||| ||||||||| |
|
|
| T |
28459714 |
cattgccataagaagtaacataattgatttcaaatgctatatttcgggtctcattacatttgtttgacttcacaatgattt |
28459634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 39188890 - 39188843
Alignment:
| Q |
190 |
tttgattattagcattggtgaaactttcaaattttccatgtatttgtg |
237 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
39188890 |
tttgattattggcattggtgaaactttgaaattttccatatatttgtg |
39188843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 28459848 - 28459798
Alignment:
| Q |
193 |
gattattagcattggtgaaactttcaaattttccatgtatttgtgttatct |
243 |
Q |
| |
|
||||||| |||||||||||| || |||||||| |||||||||||||||||| |
|
|
| T |
28459848 |
gattattggcattggtgaaaattccaaatttttcatgtatttgtgttatct |
28459798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 41261258 - 41261314
Alignment:
| Q |
190 |
tttgattattagcattggtgaaactttcaaattttccatgtatttgtgttatcttgt |
246 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||| |||||||||| || ||||| |
|
|
| T |
41261258 |
tttgattattgccattggtgaaacttccaaattttccttgtatttgtgataccttgt |
41261314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 701 - 967
Target Start/End: Original strand, 16791799 - 16792065
Alignment:
| Q |
701 |
gctcttgatttccgcatggatgaatggggtgtagatgtggtagtgacgagttctcagaaagctctttctcttcctacaggaatgggaattgtatgtgcag |
800 |
Q |
| |
|
||||| |||||||| ||||| |||||||| |||||||||| | || ||||||||||||| ||||| |||||||| || || ||| |||| |||| |
|
|
| T |
16791799 |
gctctcgatttccgtatggacgaatggggagtagatgtggccataactggttctcagaaagccctttcccttcctactggtataggatttgtggttgcaa |
16791898 |
T |
|
| Q |
801 |
gtcctaaagccattgaggctacaaaatctgctacatcagttagatctttctttgattggaatggttacttgaaatgctacaacctgggaacttattggcc |
900 |
Q |
| |
|
| ||||||||||| || ||| |||||||||| | |||| || || |||||||||||||| || ||| |||| | |||||| |||||||||||||||| |
|
|
| T |
16791899 |
gccctaaagccatcgaagcttcaaaatctgccaaatcacttcgagttttctttgattggagtgactacctgaagttctacaagatgggaacttattggcc |
16791998 |
T |
|
| Q |
901 |
atacactccttccattcaattgctctatggtctaagggcagcccttgacttagtttttgaggaagga |
967 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| || ||||| ||||| | |||||||||||||| |
|
|
| T |
16791999 |
atacactccttccattcagcttctctatggtcttagagcagctcttgatctgatttttgaggaagga |
16792065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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