View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5325-Insertion-4 (Length: 420)
Name: NF5325-Insertion-4
Description: NF5325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5325-Insertion-4 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 7 - 420
Target Start/End: Original strand, 340619 - 341032
Alignment:
| Q |
7 |
aacattcatcatcaccttattcctttttgcttctcatcaaacaaaatacctcaaaaccccagccttcacaaattggccttttcttggtatgttaccacaa |
106 |
Q |
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| T |
340619 |
aacattcatcatcaccttattcctttttgcttctcatcaaacaaaatacctcaaaaccccagccttcacaaattggccttttcttggtatgttaccacaa |
340718 |
T |
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| Q |
107 |
ttcctttggaacatatcacaaattcatgaattttcagctaaattgttgaaatcaaaaggtggaacaattgagttcctaggaccatggtttaccggcatgt |
206 |
Q |
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| T |
340719 |
ttcctttggaacatatcacaaattcatgatttttcagctaaattgttgaaatcaaaaggtggaacaattgagttcctaggaccatggtttaccggcatgt |
340818 |
T |
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| Q |
207 |
atggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcgtgaaatgtttgaacc |
306 |
Q |
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| T |
340819 |
atggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcgtgaaatgtttgaacc |
340918 |
T |
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| Q |
307 |
ttttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttcaa |
406 |
Q |
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| T |
340919 |
ttttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttcaa |
341018 |
T |
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| Q |
407 |
gagaagataattca |
420 |
Q |
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| T |
341019 |
gagaagataattca |
341032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 420
Target Start/End: Original strand, 336586 - 336994
Alignment:
| Q |
12 |
tcatcatcaccttattcctttttgcttctcatcaaacaaaatacctcaaaaccccagccttcacaaattggccttttcttggtatgttaccacaattcct |
111 |
Q |
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| T |
336586 |
tcatcctcaccttattcctatttgcttatcaccaaacaaaatgcctcaaaaccccagccttcacaaattggccttttgttggtatgttaccacaattcct |
336685 |
T |
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| Q |
112 |
ttggaacatatcacaaattcatgaattttcagctaaattgttgaaatcaaaaggtggaacaattgagttcctaggaccatggtttaccggcatgtatggt |
211 |
Q |
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| T |
336686 |
ttggaacatatcagacatccatgatttttcagctaaattgttgacatcaaaaggtggaacaatggagttcataggaccatggtttaccaacatgtatgct |
336785 |
T |
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| Q |
212 |
gttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcgtgaaatgtttgaaccttttg |
311 |
Q |
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| T |
336786 |
gtaatcacaaacgatccattgaatgttcactacatcatgagcaagaggtttgacaattttgagaaaggtgaaaggtttcgtgaaacgttccaaccttttg |
336885 |
T |
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| Q |
312 |
gtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttcaagagaa |
411 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336886 |
gtttaggaattttcactacagattcacatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttcaagagaa |
336985 |
T |
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| Q |
412 |
gataattca |
420 |
Q |
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| T |
336986 |
aatcattca |
336994 |
T |
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