View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5325-Insertion-5 (Length: 381)

Name: NF5325-Insertion-5
Description: NF5325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5325-Insertion-5
NF5325-Insertion-5
[»] chr8 (8 HSPs)
chr8 (8-381)||(15800657-15801030)
chr8 (10-159)||(15792669-15792818)
chr8 (200-381)||(15814100-15814280)
chr8 (12-144)||(15698421-15698553)
chr8 (10-144)||(15814289-15814423)
chr8 (202-282)||(15792574-15792654)
chr8 (12-107)||(15712913-15713008)
chr8 (12-159)||(15806391-15806538)


Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 381
Target Start/End: Complemental strand, 15801030 - 15800657
Alignment:
Q  8 actgttgcaggcaagcaggaaggtacaagtaaagctaaaaccttgatcatcatcttcgtaagtataacagtggcagtagttctactaagctgttgtgtct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  15801030 actgttgcaggcaagcaggaaggtacaagtaaagctaaaaccttgatcatcatcttcgtaagtataacagtggcagtagctctactaagctgttgggtct 15800931  T
Q  108 acgcttacaggagaaagaataggttaagtaaaggtaattattacaagttacacgactttgtctaattttcacaagtaaaatagtgttgcacattgaaagt 207  Q
    || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  15800930 actcttactggagaaagaataggttaagtaaaggtaattattacaagttacacgactttgtctaattttcacaagtaaaatagtcttgcacgttgaaagt 15800831  T
Q  208 tctctaagttaattttacaaaattacctatgacgatgagtctctattcaaacatcctagcttccttgctaggtggtatgctgtcgaggaccattacacct 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15800830 tctctaagttaattttacaaaattacctatgacgatgagtctctattcaaacatcctagcttccttgctaggtggtatgctgtcgaggaccattacacct 15800731  T
Q  308 atatctttccataatcaggttcaaagacaggattcattcaatggagaacttcctacaatccctttaactataat 381  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15800730 atatctttccgtaatcaggttcaaagacaggattcattcaatggagaacttcctacaatccctttaactataat 15800657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 15792818 - 15792669
Alignment:
Q  10 tgttgcaggcaagcaggaaggtacaagtaaagctaaaaccttgatcatcatcttcgtaagtataacagtggcagtagttctactaagctgttgtgtctac 109  Q
    |||||||||||||||||||||  |||||||| |||||||||| ||||||||||| |||| | || |  ||||||||| ||||||||||||||||||||||    
T  15792818 tgttgcaggcaagcaggaaggatcaagtaaaactaaaaccttaatcatcatcttagtaactgtacctttggcagtagctctactaagctgttgtgtctac 15792719  T
Q  110 gcttacaggagaaagaataggttaagtaaaggtaattattacaagttaca 159  Q
      || | ||||||||||| ||||| |||||||||||||| ||||||||||    
T  15792718 tattgctggagaaagaatgggttaggtaaaggtaattataacaagttaca 15792669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 200 - 381
Target Start/End: Complemental strand, 15814280 - 15814100
Alignment:
Q  200 ttgaaagttctctaagttaattttacaaaattacctatgacgatgagtctctattcaaacatcctagcttccttgctaggtggtatgctgtcgaggacca 299  Q
    ||||||||||| || | | ||||  |||||||||||||||  |  |||| ||||| | |||| ||| ||||||||  ||||||| ||||||  |||||||    
T  15814280 ttgaaagttctatacgcttatttcgcaaaattacctatgaaaaaaagtcactatttagacatacta-cttccttgtcaggtggtttgctgttaaggacca 15814182  T
Q  300 ttacacctatatctttccataatcaggttcaaagacaggattcattcaatggagaacttcctacaatccctttaactataat 381  Q
    |||| ||||  ||||||| | | || |||| |||| ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  15814181 ttactcctaagtctttccgtgaccatgttccaagagaggattcattcaatggagatcttcctacaatccctttaactgtaat 15814100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 15698553 - 15698421
Alignment:
Q  12 ttgcaggcaagcaggaaggtacaagtaaagctaaaaccttgatcatcatcttcgtaagtataacagtggcagtagttctactaagctgttgtgtctacgc 111  Q
    |||||| ||||||||||||| |||||||    |||||||||||||||||||| |||||| ||  | ||||||||| ||| ||| | ||||||||||||      
T  15698553 ttgcagccaagcaggaaggtgcaagtaacaaaaaaaccttgatcatcatcttagtaagtgtactaatggcagtagctctcctatgttgttgtgtctacta 15698454  T
Q  112 ttacaggagaaagaataggttaagtaaaggtaa 144  Q
     ||| ||||||||||| ||||| ||||||||||    
T  15698453 ctactggagaaagaatgggttatgtaaaggtaa 15698421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 15814423 - 15814289
Alignment:
Q  10 tgttgcaggcaagcaggaaggtacaagtaaagctaaaaccttgatcatcatcttcgtaagtataacagtggcagtagttctactaagctgttgtgtctac 109  Q
    |||||||||||| ||||| ||  | |||||  | |||||||||||||||||||| |||||| ||   |||||||||| ||||||||| |||| ||||||     
T  15814423 tgttgcaggcaaacaggacggggcgagtaataccaaaaccttgatcatcatcttagtaagtgtactggtggcagtagctctactaagttgttctgtctat 15814324  T
Q  110 gcttacaggagaaagaataggttaagtaaaggtaa 144  Q
       ||| ||||||| |||||||||| |||||||||    
T  15814323 tactaccggagaaaaaataggttaaataaaggtaa 15814289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 282
Target Start/End: Complemental strand, 15792654 - 15792574
Alignment:
Q  202 gaaagttctctaagttaattttacaaaattacctatgacgatgagtctctattcaaacatcctagcttccttgctaggtgg 282  Q
    |||||||||||||||| ||||| |||||||||||||||  ||  || || |||||||| | ||||||||||||||||||||    
T  15792654 gaaagttctctaagttcattttgcaaaattacctatgataatacgtatcaattcaaacttactagcttccttgctaggtgg 15792574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 15713008 - 15712913
Alignment:
Q  12 ttgcaggcaagcaggaaggtacaagtaaagctaaaaccttgatcatcatcttcgtaagtataacagtggcagtagttctactaagctgttgtgtct 107  Q
    |||||| ||||||||||||| |||||||    |||||||||| ||||||||| |||||| ||  | ||||||||| |||| |||  ||||||||||    
T  15713008 ttgcagccaagcaggaaggttcaagtaacaaaaaaaccttgaccatcatcttagtaagtgtactaatggcagtagctctattaatttgttgtgtct 15712913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 15806538 - 15806391
Alignment:
Q  12 ttgcaggcaagcaggaaggtacaagtaaagctaaaaccttgatcatcatcttcgtaagtataacagtggcagtagttctactaagctgttgtgtctacgc 111  Q
    |||||||||||||||||||  ||||| |  | ||||| |||||||||||| | |||||| |    |||||||||| ||||||||| || | || ||||      
T  15806538 ttgcaggcaagcaggaaggggcaagtcataccaaaactttgatcatcatcgtagtaagtgtgcttgtggcagtagctctactaagttgctatggctacta 15806439  T
Q  112 ttacaggagaaagaataggttaagtaaaggtaattattacaagttaca 159  Q
    |||| ||| ||||||  | |||||| ||||||| ||| ||||||||||    
T  15806438 ttactggaaaaagaaaggattaagtgaaggtaaatataacaagttaca 15806391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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