View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5325-Insertion-6 (Length: 215)

Name: NF5325-Insertion-6
Description: NF5325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5325-Insertion-6
NF5325-Insertion-6
[»] chr8 (3 HSPs)
chr8 (110-215)||(12139557-12139662)
chr8 (124-189)||(12028869-12028934)
chr8 (162-215)||(12040585-12040638)


Alignment Details
Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 12139662 - 12139557
Alignment:
Q  110 tctccaacaatacagtgtcagtaaccacattgaaacttaacaaagtagtcaacaaaaccatttgatacttacatgaaacacatttaaaagattatatttc 209  Q
    |||||| || ||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||  ||| || ||    
T  12139662 tctccagcagtacagtgtcagtaacgacattgaaacttaataaagcagtcaacaaaaccatttgatacttccatgaaacacatttaaaattttacatgtc 12139563  T
Q  210 caaaat 215  Q
    ||||||    
T  12139562 caaaat 12139557  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 12028869 - 12028934
Alignment:
Q  124 gtgtcagtaaccacattgaaacttaacaaagtagtcaacaaaaccatttgatacttacatgaaaca 189  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||    
T  12028869 gtgtcagtaaccacattgaaacttaataaagcagtcaacaaaaccatttgatacttccatgaaaca 12028934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 12040585 - 12040638
Alignment:
Q  162 caaaaccatttgatacttacatgaaacacatttaaaagattatatttccaaaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12040585 caaaaccatttgatacttacatgaaacacatttaaaagattatatgtccaaaat 12040638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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