View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5325-Insertion-8 (Length: 242)
Name: NF5325-Insertion-8
Description: NF5325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5325-Insertion-8 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 30001399 - 30001184
Alignment:
| Q |
8 |
taaaattcttcagcattttytgaccaaacatcaggatctctcccaattgcccatgcatttactataactcgtgtcttttcttttataaaataaccatcaa |
107 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
30001399 |
taaaattcttcagcattttctgaccaaacatcaggatctctcccaattgcccatgcatttactataactcgtgtcttttcttttatagaataatcatcaa |
30001300 |
T |
|
| Q |
108 |
ttgttatgttctcactacattcacgagggattaataaaggtgcaacaggataaagtcttaaggtttcatcaacaaccatatctaagtaattaaaattctt |
207 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
30001299 |
ttgttatgttctctctacattcacgagggattaataaaggtgcaacaggataaagtcttaaggtttcatcaaccaccatatctaggtaattaaaattctt |
30001200 |
T |
|
| Q |
208 |
caaatccttctcttca |
223 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
30001199 |
caaatccttttcttca |
30001184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 3e-77
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 30007515 - 30007300
Alignment:
| Q |
8 |
taaaattcttcagcattttytgaccaaacatcaggatctctcccaattgcccatgcatttactataactcgtgtcttttcttttataaaataaccatcaa |
107 |
Q |
| |
|
|||||||| |||||||||| ||||||||| | | |||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| ||||||| |
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|
| T |
30007515 |
taaaattcatcagcattttctgaccaaacgttacaatctctcccaatagcccatgcatttactataactcgagtctttttcgttataaaatatccatcaa |
30007416 |
T |
|
| Q |
108 |
ttgttatgttctcactacattcacgagggattaataaaggtgcaacaggataaagtcttaaggtttcatcaacaaccatatctaagtaattaaaattctt |
207 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
30007415 |
ttgttatgctctctctacattcacgagggattaataagggtccaacaggataaagtcttaaggtttcatcaacaaccatatctaagtaattaaacttctt |
30007316 |
T |
|
| Q |
208 |
caaatccttctcttca |
223 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
30007315 |
cagatccttctcttca |
30007300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 30067999 - 30068215
Alignment:
| Q |
7 |
ataaaattcttcagcattttytgaccaaacatcaggatctctcccaattgcccatgcatttactataactcgtgtcttttcttttataaaataaccatca |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| |||| || |||||||| |||||||||||| ||||| |
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|
| T |
30067999 |
ataaaattcttcagcattttctgaccaaacattaggatctctccctattgcccatgcatttaccataattctcgtcttttcctttataaaataatcatca |
30068098 |
T |
|
| Q |
107 |
attgttatgttctcactacattcacgagggattaataaaggtgcaacaggataaagtcttaaggtttcatcaacaaccatatctaagtaattaaaattct |
206 |
Q |
| |
|
|||||||||||||| ||||||| | |||||| || ||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||| |
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|
| T |
30068099 |
attgttatgttctctctacatttaggagggactagtaagggtgcaacaggatacagtcttaaggtttcatcaaccaccatatctaagtaattcaacttct |
30068198 |
T |
|
| Q |
207 |
tcaaatccttctcttca |
223 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
30068199 |
tcaaatccttctcttca |
30068215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 29945033 - 29944819
Alignment:
| Q |
9 |
aaaattcttcagcattttytgaccaaacatcaggatctctcccaattgcccatgcatttactataactcgtgtcttttcttttataaaataaccatcaat |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
29945033 |
aaaattcttcagcattttctgaccaaacattaggatctctcgctattgtaaatgcatttactataactcgtgtcttttcctttacaaaataaccatcaat |
29944934 |
T |
|
| Q |
109 |
tgttatgttctcactacattcacgagggattaataaaggtgcaacaggataaagtcttaaggtttcatcaacaaccatatctaagtaattaaaattcttc |
208 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| || |||| ||| |||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29944933 |
tgttatgttctctctacattcacgagggagtaagaagggtgaaactggatgaagtcttaaagtttcatcaaccaccatatctaagtaattaaaattcttc |
29944834 |
T |
|
| Q |
209 |
aaatccttctcttca |
223 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
29944833 |
aaatccttttcttca |
29944819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 7 - 219
Target Start/End: Complemental strand, 29995727 - 29995515
Alignment:
| Q |
7 |
ataaaattcttcagcattttytgaccaaacatcaggatctctcccaattgcccatgcatttactataactcgtgtcttttcttttataaaataaccatca |
106 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
29995727 |
ataaaattcttcggcattttctgaccaaacattaggatctctccctattgcccatgcatttactataagtcgtgtcttttcctttataaaataaccatca |
29995628 |
T |
|
| Q |
107 |
attgttatgttctcactacattcacgagggattaataaaggtgcaacaggataaagtcttaaggtttcatcaacaaccatatctaagtaattaaaattct |
206 |
Q |
| |
|
||| || || |||| ||| | |||||||||| || ||| ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||| || |||| |
|
|
| T |
29995627 |
attattgtgctctctctagactcacgagggactagtaatggtgcaacagggtaaagtcttaaggtctcatcaaccaccatatctaaataattcaacttct |
29995528 |
T |
|
| Q |
207 |
tcaaatccttctc |
219 |
Q |
| |
|
||| ||| ||||| |
|
|
| T |
29995527 |
tcatatctttctc |
29995515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 122; E-Value: 6e-63
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 30043483 - 30043694
Alignment:
| Q |
8 |
taaaattcttcagcattttytgaccaaacatcaggatctctcccaattgcccatgcatttactataactcgtgtcttttcttttataaaataaccatcaa |
107 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
30043483 |
taaaattctttagcattttctgaccaaacattaggatctctccctattgcccatgcatttactataagtcgtgtcttttcctttataaaataaccatcaa |
30043582 |
T |
|
| Q |
108 |
ttgttatgttctcactacattcacgagggattaataaaggtgcaacaggataaagtcttaaggtttcatcaacaaccatatctaagtaattaaaattctt |
207 |
Q |
| |
|
||||| || |||| ||| |||||||||||| || ||| ||||| || || |||||||||||||| |||||||| ||||||||||| ||||| || ||||| |
|
|
| T |
30043583 |
ttgttgtgctctctctagattcacgagggactagtaacggtgctacggggtaaagtcttaaggtctcatcaaccaccatatctaaataattcaacttctt |
30043682 |
T |
|
| Q |
208 |
caaatccttctc |
219 |
Q |
| |
|
| ||||||||| |
|
|
| T |
30043683 |
tagatccttctc |
30043694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 29953967 - 29953752
Alignment:
| Q |
8 |
taaaattcttcagcattttytgaccaaacatcaggatctctcccaattgcccatgcatttactataactcgtgtcttttcttttataaaataaccatcaa |
107 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| | ||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
29953967 |
taaaattcttcggcattttctgaccaaacatttgaatctctccctatagcccatgcatttactataactcgagtcttttcctttataaaatatccatcaa |
29953868 |
T |
|
| Q |
108 |
ttgttatgttctcactacattcacgagggattaataaaggtgcaacaggataaagtcttaaggtttcatcaacaaccatatctaagtaattaaaattctt |
207 |
Q |
| |
|
|||||| |||| |||||||||||||||| |||||| ||||||||||| ||||||||||| ||||||| ||| ||||| ||||||||| | || |||| |
|
|
| T |
29953867 |
ttgttacactctctctacattcacgagggagtaataagggtgcaacagggtaaagtcttaaagtttcatgaaccaccatctctaagtaacttaagttctc |
29953768 |
T |
|
| Q |
208 |
caaatccttctcttca |
223 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
29953767 |
taaatctttctcttca |
29953752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 29965236 - 29965021
Alignment:
| Q |
7 |
ataaaattcttcagcattttytgaccaaacatcaggatctctcccaattgcccatgcatttactataactcgtgtcttttcttttataaaataaccatca |
106 |
Q |
| |
|
|||||| || ||||| |||| | |||||| || | ||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
29965236 |
ataaaactcatcagcgttttctaaccaaatatttgaatctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatca |
29965137 |
T |
|
| Q |
107 |
attgttatgttctcactacattcacgagggattaataaaggtgcaacaggataaagtcttaaggtttcatcaacaaccatatctaagtaattaaaattct |
206 |
Q |
| |
|
||||||||| | || |||||||||||||| | |||||| ||| ||||||| ||||||||||| || |||||||| ||||||||||||||||| || |||| |
|
|
| T |
29965136 |
attgttatgctttctctacattcacgaggaagtaataagggtccaacagggtaaagtcttaatgtctcatcaaccaccatatctaagtaattcaacttct |
29965037 |
T |
|
| Q |
207 |
tcaaatccttctcttc |
222 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
29965036 |
tcaaatcattctcttc |
29965021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 30009562 - 30009777
Alignment:
| Q |
7 |
ataaaattcttcagcattttytgaccaaacatcaggatctctcccaattgcccatgcatttactataactcgtgtcttttcttttataaaataaccatca |
106 |
Q |
| |
|
|||||| || ||||| |||| | |||||| || | ||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
30009562 |
ataaaactcatcagcgttttctaaccaaatatttgaatctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatca |
30009661 |
T |
|
| Q |
107 |
attgttatgttctcactacattcacgagggattaataaaggtgcaacaggataaagtcttaaggtttcatcaacaaccatatctaagtaattaaaattct |
206 |
Q |
| |
|
||||||||| | || |||||||||||||| | |||||| ||| ||||||| ||||||||||| || |||||||| ||||||||||||||||| || |||| |
|
|
| T |
30009662 |
attgttatgctttctctacattcacgaggaagtaataagggtccaacagggtaaagtcttaatgtctcatcaaccaccatatctaagtaattcaacttct |
30009761 |
T |
|
| Q |
207 |
tcaaatccttctcttc |
222 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
30009762 |
tcaaatcattctcttc |
30009777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 29947004 - 29946792
Alignment:
| Q |
10 |
aaattcttcagcattttytgaccaaacatcaggatctctcccaattgcccatgcatttactataactcgtgtcttttcttttataaaataaccatcaatt |
109 |
Q |
| |
|
|||||||||| ||||| |||||||||| || ||||||| | || |||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
29947004 |
aaattcttcataattttctgaccaaacactagaatctctctctatagcccatgcatttactataactcgtgtcttttccattataaaatatccatcaatt |
29946905 |
T |
|
| Q |
110 |
gttatgttctcactacattcacgagggattaataaaggtgcaacaggataaagtcttaaggtttcatcaacaaccatatctaagtaattaaaattcttca |
209 |
Q |
| |
|
||||| |||| |||||||||||||||| ||| || ||||||||||| ||||||||||| ||||||| ||| ||||||||||||||| | || |||| | |
|
|
| T |
29946904 |
gttatactctctctacattcacgagggagtaacaagggtgcaacagggtaaagtcttaaagtttcatgaaccaccatatctaagtaacttaacttctcta |
29946805 |
T |
|
| Q |
210 |
aatccttctcttc |
222 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
29946804 |
aatctttctcttc |
29946792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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