View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5325_high_3 (Length: 416)
Name: NF5325_high_3
Description: NF5325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5325_high_3 |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 3878064 - 3878463
Alignment:
| Q |
1 |
agaaggaactattcttgcctttcttacatcacagttagatgtagaatgggcttgtgaaaagtttgaagccccctctgcagtagctttgcccttgcatgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3878064 |
agaaggaactattcttgcctttcttacatcacagttagatgtagaatgggcttgtgaaaagtttgaagccccctctgcagtagctttgcccttgcatgga |
3878163 |
T |
|
| Q |
101 |
aaactttcgtctgaagagcaatttcatattttcaagaactatcctggaaaaagaaaagtgatattttcaacgaatgtcgcagagacatcacttacgattc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3878164 |
aaactttcgtctgaagagcaatttcatattttcaagaactatcctggaaaaagaaaagtgatattttcaacgaatgtcgcagagacatcacttacaattc |
3878263 |
T |
|
| Q |
201 |
ctggtgttaagtatgtgatagattctggattggttaaagatagtcgttttgatcctagcagtgggatgaatgtacttaaggtttgctggatcagccagag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3878264 |
ctggtgttaagtatgtgatagattctggattggttaaagatagtcgttttgatcctagcagtgggatgaatgtacttaaggtttgctggatcagccagag |
3878363 |
T |
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| Q |
301 |
ttctgctaaccaacgggctggtcgtgctgggaggaccgagcctggtagatgctatagactgtactcagaagctgattatcagtctatggaaccaaatcaa |
400 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3878364 |
ttctgctaagcaacgggctggtcgtgctgggaggaccgagcctggtagatgctatagactgtactcagaagctgattatcagtctatggaaacaaatcaa |
3878463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 39321609 - 39321210
Alignment:
| Q |
1 |
agaaggaactattcttgcctttcttacatcacagttagatgtagaatgggcttgtgaaaagtttgaagccccctctgcagtagctttgcccttgcatgga |
100 |
Q |
| |
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||||||| |||||||||||||||| || |||||| |||| ||||||||||| || ||||| ||| |||||| ||||| || ||| ||||||||||||| |
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| T |
39321609 |
agaaggagctattcttgcctttctgacctcacaggtagaagtagaatgggcctgcgaaaactttaaagccctatctgccgtcgctctgcccttgcatggg |
39321510 |
T |
|
| Q |
101 |
aaactttcgtctgaagagcaatttcatattttcaagaactatcctggaaaaagaaaagtgatattttcaacgaatgtcgcagagacatcacttacgattc |
200 |
Q |
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||||||||||| ||||||||||||||| ||||| |||| || |||||||||||||||||||||||||| |||||| | |||||||||||| |||| |||| |
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| T |
39321509 |
aaactttcgtccgaagagcaatttcatgttttccagaaataccctggaaaaagaaaagtgatattttcgacgaatcttgcagagacatcaattacaattc |
39321410 |
T |
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| Q |
201 |
ctggtgttaagtatgtgatagattctggattggttaaagatagtcgttttgatcctagcagtgggatgaatgtacttaaggtttgctggatcagccagag |
300 |
Q |
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||||||||||||||||||| |||||||| |||||||||||| | || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39321409 |
ctggtgttaagtatgtgattgattctgggttggttaaagattgccgatttgatccttgcactgggatgaatgtacttaaggtttgctggatcagccagag |
39321310 |
T |
|
| Q |
301 |
ttctgctaaccaacgggctggtcgtgctgggaggaccgagcctggtagatgctatagactgtactcagaagctgattatcagtctatggaaccaaatcaa |
400 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||| |
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| T |
39321309 |
ctctgctaatcaaagggctggtcgtgctgggaggaccgagcctggcagatgctataggatgtactcagaagctgattataggtctatggaactaaatcaa |
39321210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 21976 - 22375
Alignment:
| Q |
1 |
agaaggaactattcttgcctttcttacatcacagttagatgtagaatgggcttgtgaaaagtttgaagccccctctgcagtagctttgcccttgcatgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21976 |
agaaggaactattcttgcctttcttacatcacagttagatgtagaatgggcttgtgaaaagtttgaagccccctctgcagtagctttgcccttgcatgga |
22075 |
T |
|
| Q |
101 |
aaactttcgtctgaagagcaatttcatattttcaagaactatcctggaaaaagaaaagtgatattttcaacgaatgtcgcagagacatcacttacgattc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22076 |
aaactttcgtctgaagagcaatttcatattttcaagaactatcctggaaaaagaaaagtgatattttcaacgaatgtcgcagagacatcacttacaattc |
22175 |
T |
|
| Q |
201 |
ctggtgttaagtatgtgatagattctggattggttaaagatagtcgttttgatcctagcagtgggatgaatgtacttaaggtttgctggatcagccagag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22176 |
ctggtgttaagtatgtgatagattctggattggttaaagatagtcgttttgatcctagcagtgggatgaatgtacttaaggtttgctggatcagccagag |
22275 |
T |
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| Q |
301 |
ttctgctaaccaacgggctggtcgtgctgggaggaccgagcctggtagatgctatagactgtactcagaagctgattatcagtctatggaaccaaatcaa |
400 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22276 |
ttctgctaaacaacgggctggtcatgctgggaggaccgagcctggtagatgctatagactgtactcagaagctgattatcagtctatggaaacaaatcaa |
22375 |
T |
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