View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5325_high_4 (Length: 397)
Name: NF5325_high_4
Description: NF5325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5325_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 36269734 - 36270106
Alignment:
| Q |
19 |
aacttctctctccaaaaccattcttataagatccaattgtgtatcacattgcttcaatgtcttcttcctcgcaggaacagaaccagaaggtgaatctgtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36269734 |
aacttctctctccaaaaccattcttataagatccaattgtgtatcacattgcttcaatgtcttcttcctcgcaggaacagaaccagaaggtgaatctgtc |
36269833 |
T |
|
| Q |
119 |
aacgattcagaactctctgcaagcttcactttcttcttcttagtttttctcagctccattttgaactctttttctaccctaactgtttcttccacattgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36269834 |
aacgattcagaactctctgcaagcttcactttcttcttcttagtttttctcagctccattttgaactccttttctaccctaactgtttcttccacattgt |
36269933 |
T |
|
| Q |
219 |
caacaccaacaacagtttcttgttcttgttcttcttccttgttcttacgctttctctgaagcttcaaagactctggtaccttttctctatattgacgatg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36269934 |
caacaccaacaacagtttcttgttcttgttcttcttccttgttcttacgctttctctgaagcttcaaagactctggtaccttttctctatattgacgatg |
36270033 |
T |
|
| Q |
319 |
cttcccttgaagataatgaatctcacacagtttcagattatccatcactctcctcttgcaccgcctttgcttc |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36270034 |
cttcccttgaagataatgaatctcacacagtttcagattatccatcactctcctcttgcaccgccattgcttc |
36270106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University