View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5325_high_5 (Length: 350)

Name: NF5325_high_5
Description: NF5325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5325_high_5
NF5325_high_5
[»] chr2 (6 HSPs)
chr2 (13-333)||(43275372-43275692)
chr2 (76-158)||(12481531-12481614)
chr2 (78-208)||(11064473-11064604)
chr2 (77-182)||(12931512-12931618)
chr2 (77-213)||(5137207-5137344)
chr2 (143-208)||(37253242-37253307)
[»] chr7 (4 HSPs)
chr7 (141-213)||(39079903-39079975)
chr7 (136-213)||(16015683-16015759)
chr7 (100-242)||(26239862-26240006)
chr7 (102-162)||(42968195-42968255)
[»] chr5 (7 HSPs)
chr5 (105-221)||(32337501-32337616)
chr5 (151-232)||(5091054-5091135)
chr5 (151-208)||(15844492-15844549)
chr5 (100-202)||(37656924-37657027)
chr5 (115-161)||(6787776-6787822)
chr5 (136-182)||(31973143-31973189)
chr5 (13-73)||(39156654-39156714)
[»] chr8 (4 HSPs)
chr8 (77-243)||(31197586-31197752)
chr8 (136-208)||(30590513-30590585)
chr8 (110-182)||(30966075-30966147)
chr8 (77-182)||(45031369-45031474)
[»] chr4 (4 HSPs)
chr4 (142-208)||(17912812-17912878)
chr4 (13-48)||(22237806-22237841)
chr4 (106-180)||(25602260-25602336)
chr4 (131-198)||(55253342-55253409)
[»] chr1 (10 HSPs)
chr1 (141-219)||(19810967-19811045)
chr1 (141-218)||(41590497-41590573)
chr1 (106-198)||(347078-347170)
chr1 (117-191)||(31293953-31294027)
chr1 (136-208)||(40571592-40571663)
chr1 (134-188)||(19809945-19809999)
chr1 (74-176)||(43480341-43480443)
chr1 (15-47)||(1255181-1255213)
chr1 (77-157)||(38668331-38668411)
chr1 (165-213)||(40188669-40188717)
[»] chr6 (2 HSPs)
chr6 (74-122)||(466317-466365)
chr6 (74-178)||(16570127-16570231)
[»] chr3 (2 HSPs)
chr3 (74-158)||(30179740-30179824)
chr3 (151-207)||(54861605-54861661)


Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 333
Target Start/End: Original strand, 43275372 - 43275692
Alignment:
Q  13 aatatttgacgttaatcatatctaccttaaaagtcacacaaatgctggtttgcaattggttttaaagagtcccacattagatgagtaatggtctgaaaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43275372 aatatttgacgttaatcatatctaccttaaaagtcacacaaatgctggtttgcaattggttttaaagagtcccacattagatgagtaatggtctgaaaat 43275471  T
Q  113 gtgtttatatgtgagggtagtcttcacgttacaagtcggttttgtaaggttcagttagtcccaacccaaagtttaatatggtatcagagcctatccgaga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43275472 gtgtttatatgtgagggtagtcttcacgttacaagtcggttttgtaaggttcagttagtcccaacccaaagtttaatatggtatcagagcctatccgaga 43275571  T
Q  213 tatgttgggccatctactatcagctttccgcaatcaagtaactttgatcatgctccaaatgtgcaaagtttccacttgaatcatttattcatgctccaga 312  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43275572 tatgttgggccatctactatcagctttccgcgatcaagtaactttgatcatgctccaaatgtgcaaagtttccacttgaatcatttattcatgctccaga 43275671  T
Q  313 tgtataagtgagggcagttct 333  Q
    |||||||||||||||||||||    
T  43275672 tgtataagtgagggcagttct 43275692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 12481531 - 12481614
Alignment:
Q  76 aaagagtcccacattagatgagtaatggtctgaaaatgtgtttatatgtg-agggtagtcttcacgttacaagtcggttttgta 158  Q
    |||||||||||| | |||||||  |||| ||||||||||||| ||||||| ||||||||| |||| ||||||| ||||||||||    
T  12481531 aaagagtcccacttcagatgagatatggcctgaaaatgtgttcatatgtgaagggtagtcctcaccttacaagccggttttgta 12481614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 11064604 - 11064473
Alignment:
Q  78 agagtcccacattagatgagtaatggtctgaaaatgtgtttatatgtgagggtagtcttcacgttacaagtcggttttgtaa-ggttcagttagtcccaa 176  Q
    ||||||||||||| ||||||  ||||  |||| |||||| |||| ||| | ||||||||||| ||||||| | |||||  || |||| ||||||   |||    
T  11064604 agagtcccacattggatgagatatggcatgaagatgtgtctataagtgggagtagtcttcaccttacaagccagttttccaagggttgagttaggtgcaa 11064505  T
Q  177 cccaaagtttaatatggtatcagagcctatcc 208  Q
    |||||| | |||||||||||| ||||||||||    
T  11064504 cccaaattctaatatggtatcggagcctatcc 11064473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 12931512 - 12931618
Alignment:
Q  77 aagagtcccacattagatgagtaatggtctgaaaatgtgtttatatgtga-gggtagtcttcacgttacaagtcggttttgtaaggttcagttagtccca 175  Q
    ||||||| |||||| ||||||  |||||| || |||||||||||||||||  ||||||| |||| ||||||| | |||||| |||| | | |||  ||||    
T  12931512 aagagtctcacattggatgagatatggtcagacaatgtgtttatatgtgacaggtagtcctcaccttacaagccagttttgcaaggatgaattaaaccca 12931611  T
Q  176 acccaaa 182  Q
    |||||||    
T  12931612 acccaaa 12931618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 5137207 - 5137344
Alignment:
Q  77 aagagtcccacattagatgagtaatggtctgaaaatgtgtttatatgtgagggtagtcttcacgttacaagtcggttttgtaaggttcag-ttagtccca 175  Q
    ||||||||||  |||||||||  |||| |||| ||||| |||||| ||| | ||||||||||| ||||||| |  ||||||||| || || ||||   ||    
T  5137207 aagagtcccatgttagatgagatatggcctgacaatgtatttataagtgggagtagtcttcaccttacaagccaattttgtaagtttgagtttagggaca 5137306  T
Q  176 acccaaagtttaatatggtatcagagcctatccgagat 213  Q
    ||||||| | ||| ||||||| ||||| ||||| ||||    
T  5137307 acccaaattctaagatggtattagagcttatccaagat 5137344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 37253307 - 37253242
Alignment:
Q  143 acaagtcggttttgtaaggttcagttagtcccaacccaaagtttaatatggtatcagagcctatcc 208  Q
    ||||| ||||||||||||||||||||||  |||||||||| | ||| || |||||| || ||||||    
T  37253307 acaagccggttttgtaaggttcagttaggtccaacccaaactataagattgtatcataggctatcc 37253242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 39079975 - 39079903
Alignment:
Q  141 ttacaagtcggttttgtaaggttcagttagtcccaacccaaagtttaatatggtatcagagcctatccgagat 213  Q
    ||||||| ||||||||||||||| |||||| ||||||||||| ||||| |||| |||||||||||||| ||||    
T  39079975 ttacaagccggttttgtaaggtttagttaggcccaacccaaattttaagatggcatcagagcctatcctagat 39079903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 16015759 - 16015683
Alignment:
Q  136 tcacgttacaagtcggttttgtaaggttcagttagtcccaacccaaagtttaatatggtatcagagcctatccgagat 213  Q
    |||| |||||||||||||| |||||||| |||||| ||||| | ||| ||||| ||| ||| ||||||||||| ||||    
T  16015759 tcaccttacaagtcggttt-gtaaggttgagttaggcccaatcaaaattttaagatgatattagagcctatcctagat 16015683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 242
Target Start/End: Complemental strand, 26240006 - 26239862
Alignment:
Q  100 atggtctgaaaatgtgtttatatgtgagggtagtcttcacgttacaagtcggttttgtaaggttcagttagtcccaacc-caaagtttaatatggtatca 198  Q
    ||||||||| |||||||||||| ||| ||| | || |||| | |||||||||| ||||  ||||  ||||| ||||||| |||  | ||| |||||||||    
T  26240006 atggtctgacaatgtgtttataagtgggggcaatcctcacctcacaagtcggtattgtggggttgtgttagacccaaccacaatttctaagatggtatca 26239907  T
Q  199 gagcct-atccgagatatgttgggccatctactatcagctttccg 242  Q
    ||||||  ||| ||||  ||||||||| || ||||||| ||||||    
T  26239906 gagcctcctccaagatccgttgggccacctgctatcaggtttccg 26239862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 42968255 - 42968195
Alignment:
Q  102 ggtctgaaaatgtgtttatatgtgagggtagtcttcacgttacaagtcggttttgtaaggt 162  Q
    |||||||| ||| ||||||| ||||| | | ||||||  ||||||||||||||||||||||    
T  42968255 ggtctgaacatgggtttataagtgagtgcaatcttcagcttacaagtcggttttgtaaggt 42968195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 32337501 - 32337616
Alignment:
Q  105 ctgaaaatgtgtttatatgtgagggtagtcttcacgttacaagtcggttttgtaaggttcagttagtcccaacccaaagtttaatatggtatcagagcct 204  Q
    ||||||||||| ||||| | | |||||||| ||||| |||||| |||||||||| ||||   |||| ||||||||||| | ||||||||||||||| |||    
T  32337501 ctgaaaatgtgcttatagg-gtgggtagtcctcacgctacaagccggttttgtagggttgtattaggcccaacccaaattctaatatggtatcagatcct 32337599  T
Q  205 atccgagatatgttggg 221  Q
    |||| ||||||| ||||    
T  32337600 atccaagatatgctggg 32337616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 5091135 - 5091054
Alignment:
Q  151 gttttgtaaggttcagttagtcccaacccaaagtttaatatggtatcagagcctatccgagatatgttgggccatctactat 232  Q
    ||||||||||||| | |||| | |||| | |||||||||||||||||||||| ||||| ||||   |||||||| |||||||    
T  5091135 gttttgtaaggttgatttaggctcaacaccaagtttaatatggtatcagagcatatccaagatccattgggccacctactat 5091054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 15844549 - 15844492
Alignment:
Q  151 gttttgtaaggttcagttagtcccaacccaaagtttaatatggtatcagagcctatcc 208  Q
    |||||||||| || |||||| ||||||||||| ||||| ||||| |||||||||||||    
T  15844549 gttttgtaagattgagttaggcccaacccaaattttaagatggtgtcagagcctatcc 15844492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 202
Target Start/End: Complemental strand, 37657027 - 37656924
Alignment:
Q  100 atggtctgaaaatgtgtttatatgtgagggtagtcttcacgttacaagtcggttttgtaaggttcagttagtcccaacc-caaagtttaatatggtatca 198  Q
    ||||||||| |||||||||||| ||| ||||| || | || | |||||||||||||||  |||| |||||| ||||||| | | || ||| |||||||||    
T  37657027 atggtctgacaatgtgtttataagtgggggtaatccttacctcacaagtcggttttgtggggttaagttaggcccaaccaccatgtctaacatggtatca 37656928  T
Q  199 gagc 202  Q
    ||||    
T  37656927 gagc 37656924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 6787776 - 6787822
Alignment:
Q  115 gtttatatgtgagggtagtcttcacgttacaagtcggttttgtaagg 161  Q
    ||||||| ||||||| | ||||||| |||||||||||||||||||||    
T  6787776 gtttataagtgagggaaatcttcactttacaagtcggttttgtaagg 6787822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 31973189 - 31973143
Alignment:
Q  136 tcacgttacaagtcggttttgtaaggttcagttagtcccaacccaaa 182  Q
    |||| ||||| | |||||||||||||||||||||| |||||||||||    
T  31973189 tcaccttacatgccggttttgtaaggttcagttaggcccaacccaaa 31973143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 39156714 - 39156654
Alignment:
Q  13 aatatttgacgttaatcatatctaccttaaaagtcacacaaatgctggtttgcaattggtt 73  Q
    |||||||||| | |||||||  |||||||||||||| ||||||| |||||||  |||||||    
T  39156714 aatatttgacttcaatcatacataccttaaaagtcatacaaatgatggtttgtgattggtt 39156654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 243
Target Start/End: Original strand, 31197586 - 31197752
Alignment:
Q  77 aagagtcccacattagatgagtaatggtctgaaaatgtgtttatatgtgagggtagtcttcacgttacaagtcggttttgtaaggttcagttagtcccaa 176  Q
    |||||||| |||| ||||  || ||||||||| |||||||||||| || |||||| |  |||| | | |||||||||||||| ||||  ||||| |||||    
T  31197586 aagagtcctacatcagataggtgatggtctgacaatgtgtttataagtaagggtaattctcacctcaaaagtcggttttgtagggttgtgttaggcccaa 31197685  T
Q  177 cccaaagtttaatatggtatcagagcctatccgagatatgttgggccatctactatcagctttccgc 243  Q
    ||  |  | ||| ||||||||||||||| ||||||||   |||||||| || ||||||| |||||||    
T  31197686 ccagatttctaagatggtatcagagcctctccgagatccattgggccacctgctatcaggtttccgc 31197752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 30590513 - 30590585
Alignment:
Q  136 tcacgttacaagtcggttttgtaaggttcagttagtcccaacccaaagtttaatatggtatcagagcctatcc 208  Q
    |||| ||||||| ||||||||||||||| | |||| || | |||||| | ||||||||||||| |||||||||    
T  30590513 tcaccttacaagccggttttgtaaggttgacttaggcctagcccaaattctaatatggtatcaaagcctatcc 30590585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 30966147 - 30966075
Alignment:
Q  110 aatgtgtttatatgtgagggtagtcttcacgttacaagtcggttttgtaaggttcagttagtcccaacccaaa 182  Q
    |||||||||||| ||| ||| |||| |||| ||||||| |||||||||||  || |||||| |||||||||||    
T  30966147 aatgtgtttataagtgggggcagtcctcaccttacaagccggttttgtaaatttgagttaggcccaacccaaa 30966075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 45031474 - 45031369
Alignment:
Q  77 aagagtcccacattagatgagtaatggtctgaaaatgtgtttatatgtgagggtagtcttcacgttacaagtcggttttgtaaggttcagttagtcccaa 176  Q
    ||||||||| |||| ||||||  ||| | |||| || |||||||| ||  ||| | || |||| ||||||| |||||||||||||||  ||||| |||||    
T  45031474 aagagtcccccattggatgagagatgatatgaacatatgtttataagtcggggcaatcctcaccttacaagccggttttgtaaggttgtgttaggcccaa 45031375  T
Q  177 cccaaa 182  Q
    ||||||    
T  45031374 cccaaa 45031369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 17912812 - 17912878
Alignment:
Q  142 tacaagtcggttttgtaaggttcagttagtcccaacccaaagtttaatatggtatcagagcctatcc 208  Q
    |||||| |||||||||| |||| |||||| ||||||||||| ||||| ||||||| |||||||||||    
T  17912812 tacaagccggttttgtagggttgagttaggcccaacccaaattttaagatggtatgagagcctatcc 17912878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 22237841 - 22237806
Alignment:
Q  13 aatatttgacgttaatcatatctaccttaaaagtca 48  Q
    |||||||||| |||||||||||||||||||||||||    
T  22237841 aatatttgactttaatcatatctaccttaaaagtca 22237806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 25602260 - 25602336
Alignment:
Q  106 tgaaaatgtgtttatatgtgag-ggtagtcttcacgttacaagtcggttttgta-aggttcagttagtcccaaccca 180  Q
    |||||||||||||||| ||||| ||||||| |||| |||||||  ||||||||| |||||  ||||| |||||||||    
T  25602260 tgaaaatgtgtttataagtgagaggtagtcctcactttacaaggtggttttgtagaggttgtgttaggcccaaccca 25602336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 55253342 - 55253409
Alignment:
Q  131 agtcttcacgttacaagtcggttttgtaaggttcagttagtcccaacccaaagtt-taatatggtatca 198  Q
    |||| |||| ||||||||||||||||||||||| |||||| | ||| ||||| || |||||||||||||    
T  55253342 agtcctcaccttacaagtcggttttgtaaggttgagttag-ctcaagccaaaattctaatatggtatca 55253409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 19811045 - 19810967
Alignment:
Q  141 ttacaagtcggttttgtaaggttcagttagtcccaacccaaagtttaatatggtatcagagcctatccgagatatgttg 219  Q
    ||||||| ||||||||||||||| | |||| || |||||||| ||||| |||||||||||| |||||| |||| |||||    
T  19811045 ttacaagccggttttgtaaggttgacttaggccgaacccaaattttaagatggtatcagagactatcctagatctgttg 19810967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 41590573 - 41590497
Alignment:
Q  141 ttacaagtcggttttgtaaggttcagttagtcccaacccaaagtttaatatggtatcagagcctatccgagatatgtt 218  Q
    ||||||| |||||| |||||||| |||||| || |||||||| | ||| ||||||||||||||||||| |||||||||    
T  41590573 ttacaagccggtttcgtaaggttgagttaggcc-aacccaaattctaagatggtatcagagcctatcctagatatgtt 41590497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 347078 - 347170
Alignment:
Q  106 tgaaaatgtgtttatatgtgagggtagtcttcacgttacaagtcggttttgtaaggttcagttagtcccaacccaaagtttaatatggtatca 198  Q
    |||| ||||||||||| || ||||||||  |||| |||||||  |||||||||||||| ||||||  |||||||||| | ||||||| |||||    
T  347078 tgaacatgtgtttataagttagggtagtgctcaccttacaagctggttttgtaaggttgagttagggccaacccaaattctaatatgttatca 347170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 31294027 - 31293953
Alignment:
Q  117 ttatatgtgagggtagtcttcacgttacaagtcggttttgtaaggttcagttagtcccaacccaaagtttaatat 191  Q
    ||||| ||||||| | || |||| ||||||||| ||||||||| ||| |||||| ||||||| ||||||||||||    
T  31294027 ttataagtgagggcaatcctcactttacaagtcagttttgtaaagttgagttaggcccaaccaaaagtttaatat 31293953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 40571592 - 40571663
Alignment:
Q  136 tcacgttacaagtcggttttgtaaggttcagttagtcccaacccaaagtttaatatggtatcagagcctatcc 208  Q
    |||| |||||||| |||||||||||||| |||||| ||||| ||||| ||||| ||||||||| || ||||||    
T  40571592 tcaccttacaagttggttttgtaaggttgagttaggcccaatccaaa-tttaagatggtatcaaagtctatcc 40571663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 19809999 - 19809945
Alignment:
Q  134 cttcacgttacaagtcggttttgtaaggttcagttagtcccaacccaaagtttaa 188  Q
    |||||| ||||||| || |||||||||||| |||||| ||||||||||| |||||    
T  19809999 cttcaccttacaagccgattttgtaaggttgagttaggcccaacccaaaatttaa 19809945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 43480341 - 43480443
Alignment:
Q  74 ttaaagagtcccacattagatgagtaatggtctgaaaatgtgtttatatgtgagggtagtcttcacgttacaagtcggttttgtaaggttcagttagtcc 173  Q
    ||||||||||||| ||| ||||||  |||| ||||| | ||||||| | ||| |||||||| |||| | ||||| ||||||| ||||| | |||||| ||    
T  43480341 ttaaagagtcccatattggatgagagatggcctgaacaagtgtttacaagtgggggtagtcctcacctcacaagccggttttttaaggatgagttagacc 43480440  T
Q  174 caa 176  Q
    |||    
T  43480441 caa 43480443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 1255181 - 1255213
Alignment:
Q  15 tatttgacgttaatcatatctaccttaaaagtc 47  Q
    |||||||| ||||||||||||||||||||||||    
T  1255181 tatttgactttaatcatatctaccttaaaagtc 1255213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 38668331 - 38668411
Alignment:
Q  77 aagagtcccacattagatgagtaatggtctgaaaatgtgtttatatgtgagggtagtcttcacgttacaagtcggttttgt 157  Q
    |||||||||||||  |||  || ||||| ||| |||||||||||| ||| ||| | || |||| |||||||||||||||||    
T  38668331 aagagtcccacatcggatatgtgatggtttgacaatgtgtttataagtgggggcaatcatcaccttacaagtcggttttgt 38668411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 40188717 - 40188669
Alignment:
Q  165 agttagtcccaacccaaagtttaatatggtatcagagcctatccgagat 213  Q
    ||||||| |||||||||| ||||| ||||| ||||||||||||| ||||    
T  40188717 agttagtgccaacccaaattttaagatggtgtcagagcctatccaagat 40188669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 466365 - 466317
Alignment:
Q  74 ttaaagagtcccacattagatgagtaatggtctgaaaatgtgtttatat 122  Q
    ||||||||||||||||| ||||||  |||| |||| |||||||||||||    
T  466365 ttaaagagtcccacattggatgagatatggcctgacaatgtgtttatat 466317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 178
Target Start/End: Original strand, 16570127 - 16570231
Alignment:
Q  74 ttaaagagtcccacattagatgagtaatggtctgaaaatgtgtttatatgtgagggtagtcttcacgttacaagtcggttttgtaaggttcagttagtcc 173  Q
    ||||||||| |||||| |||| ||  |||  |||| |||||||||||| | | ||||| || |||||| |||||||||||||||  ||||  ||||| ||    
T  16570127 ttaaagagtaccacataagataagagatgtcctgacaatgtgtttataagcgggggtaatcctcacgtaacaagtcggttttgtggggttgtgttaggcc 16570226  T
Q  174 caacc 178  Q
    |||||    
T  16570227 caacc 16570231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 30179824 - 30179740
Alignment:
Q  74 ttaaagagtcccacattagatgagtaatggtctgaaaatgtgtttatatgtgagggtagtcttcacgttacaagtcggttttgta 158  Q
    |||||||||||||||| |||| ||  |||  |||| |||||||||||| ||| ||||| || |||| | ||||||| ||||||||    
T  30179824 ttaaagagtcccacatcagataagagatgacctgacaatgtgtttataagtgggggtaatcctcacctcacaagtcagttttgta 30179740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 54861605 - 54861661
Alignment:
Q  151 gttttgtaaggttcagttagtcccaacccaaagtttaatatggtatcagagcctatc 207  Q
    ||||||| ||||| |||||  ||||||||||| ||||| ||||||| ||||||||||    
T  54861605 gttttgttaggttgagttacgcccaacccaaattttaagatggtatgagagcctatc 54861661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University