View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5325_low_1 (Length: 816)

Name: NF5325_low_1
Description: NF5325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5325_low_1
NF5325_low_1
[»] chr7 (8 HSPs)
chr7 (50-490)||(25488388-25488825)
chr7 (509-805)||(25488811-25489113)
chr7 (164-463)||(25474996-25475301)
chr7 (164-349)||(25432609-25432794)
chr7 (48-135)||(25448461-25448548)
chr7 (423-463)||(25448892-25448932)
chr7 (58-125)||(25475412-25475479)
chr7 (164-266)||(25641408-25641510)
[»] chr2 (1 HSPs)
chr2 (165-270)||(35042221-35042326)
[»] chr5 (1 HSPs)
chr5 (181-284)||(496434-496537)


Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 50 - 490
Target Start/End: Original strand, 25488388 - 25488825
Alignment:
Q  50 tatccaggattcatgaatctgttgagactcttggaaatctgagctacttaagtttgagagactgcacaaatcttgttgaaataccttatatgttggaatg 149  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25488388 tatccaggattcatgaatttgttgagactcttggaaatctgagctacttaagtttgagagactgcacaaatcttgttgaaataccttgtatgttggaatg 25488487  T
Q  150 ctatcttcctctcaaatctttgatttatttggacttaagcttttccaatatttctgaagtaccagatgcgattggagaattagagagtttagaaagacta 249  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  25488488 ctatattcctctcaaatctttgatttatttggacttaagcttttgcaatatttctaaagtaccagatgcgattggagaattaaagagtttagaaagacta 25488587  T
Q  250 aatctacacggaaataaatttacttcaattccttccatcttcagttgtcttgagaatctatcatatttgaacctgtctcattgccatatgcttcagagtt 349  Q
    |||||||| |||||||||||||||||| ||||||||| || ||   | ||| | |||||||||||||||||| |||||||||||||||||||||||||||    
T  25488588 aatctacagggaaataaatttacttcagttccttccacctaca---ggcttaaaaatctatcatatttgaacttgtctcattgccatatgcttcagagtt 25488684  T
Q  350 cgtctgaactcccaacagcaaacggtccatccgatttactaggaaggtattttgaaacaacatcccaatcccataatcatagatcaggattatatatttt 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  25488685 cgtctgaactcccaacagcaaacggtccatccgatttactaggaaggtattttgaaacaacatcccaatcccataatcatagatcaggattatatattgt 25488784  T
Q  450 cgactctcccaattacaccaatttagatttcttcgggtcag 490  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  25488785 cgactctcccaattacaccaatttagatttcttctggtcag 25488825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 509 - 805
Target Start/End: Original strand, 25488811 - 25489113
Alignment:
Q  509 atttattcaggtcagccattggatggatgctaagactagttgaggtacgtaatacttttccaacagctcctcgttttcgttctctattttaaatgtgtgn 608  Q
    |||| ||| |||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||     
T  25488811 atttcttctggtcaggcattggatggatgcaaagactagttaaggtacgtaatacttttccaacagctcctcgttttctttctctattttaattgtgtgt 25488910  T
Q  609 nnnnnnctctgctgatatattgagactctacattaaccctatagagacacacctacaca-gaaggttgttaatttagaaccacctaaaaacatgaaggtt 707  Q
          |||||||||||||| |||||||||||||| ||   |||||||||||| ||||| ||||||||||||||||||   |||||||||||||||||||    
T  25488911 ttttctctctgctgatatatcgagactctacattaccc---tagagacacacccacacaggaaggttgttaatttagagagacctaaaaacatgaaggtt 25489007  T
Q  708 aaattaataaatacacatcttttgatttg--------gaccacatattactatttaaaaatagttttaaatagaagacgagattgtaattttatatatcg 799  Q
    ||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  25489008 aaattaacaaatacacatcttttgatttggaccaaaagaccacatattactatttaaaaatagttttaaatagaagacaagattgtaattttctatatcg 25489107  T
Q  800 tatatt 805  Q
    ||||||    
T  25489108 tatatt 25489113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 164 - 463
Target Start/End: Complemental strand, 25475301 - 25474996
Alignment:
Q  164 aatctttgatttatttggacttaagcttttccaatatttctgaagtaccagatgcgattggagaattagagagtttagaaagactaaatctacacggaaa 263  Q
    |||||||||||||| | ||||||||||||| || ||||||   | |||| ||||| ||||||||||||  | |||| ||| |||||||||| || |||||    
T  25475301 aatctttgatttatctagacttaagcttttgcagtatttccataatacctgatgctattggagaattaatgtgtttggaacgactaaatcttcaaggaaa 25475202  T
Q  264 taaatttacttcaattccttccatcttcagttgtcttgagaatctatcatatttgaacctgtctcattgccatatgcttcagagttcgtctgaac----- 358  Q
    ||| || ||||||||||||||    || ||||| ||| | |||||||| ||||| ||| ||||||||||||||| ||||  ||||| | ||   |         
T  25475201 taacttcacttcaattccttcttcattaagttggcttcacaatctatcgtatttaaacttgtctcattgccataagctttggagtttgccttcgctccct 25475102  T
Q  359 -tcccaacagcaaacggtccatccgatttactaggaaggtattttgaaacaacatcccaatcccataatcatagatcaggattatatattttcgactctc 457  Q
     ||||||||| ||  |||||||| |||| | | ||||| |||||| ||||||||||   ||||| ||||||||||||||||||||||||||| || ||||    
T  25475101 atcccaacagaaagtggtccatcagattcagttggaagatattttaaaacaacatctggatcccgtaatcatagatcaggattatatatttttgattctc 25475002  T
Q  458 ccaatt 463  Q
    ||||||    
T  25475001 ccaatt 25474996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 164 - 349
Target Start/End: Complemental strand, 25432794 - 25432609
Alignment:
Q  164 aatctttgatttatttggacttaagcttttccaatatttctgaagtaccagatgcgattggagaattagagagtttagaaagactaaatctacacggaaa 263  Q
    |||||||||||||||||||||| ||||||| ||| |||| ||||| |||  | | |||||||||||||  | ||||||||||||||||||| || |||||    
T  25432794 aatctttgatttatttggacttgagcttttgcaacatttatgaagaacctaaagtgattggagaattaaggtgtttagaaagactaaatcttcagggaaa 25432695  T
Q  264 taaatttacttcaattccttccatcttcagttgtcttgagaatctatcatatttgaacctgtctcattgccatatgcttcagagtt 349  Q
    ||| || ||| || ||||||||| ||| ||  |||||   |||||||||||||| ||| ||||||||||||||| |||||| ||||    
T  25432694 taacttcactacacttccttccaccttgagccgtctttgcaatctatcatatttaaacttgtctcattgccataggcttcaaagtt 25432609  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 135
Target Start/End: Original strand, 25448461 - 25448548
Alignment:
Q  48 tttatccaggattcatgaatctgttgagactcttggaaatctgagctacttaagtttgagagactgcacaaatcttgttgaaatacct 135  Q
    |||||||| ||||||||||||| ||| | |||||| ||| || |  | | ||||||| |||||||||||||||||||||| |||||||    
T  25448461 tttatccacgattcatgaatctattggggctcttgcaaagcttaaattcataagttttagagactgcacaaatcttgttggaatacct 25448548  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 423 - 463
Target Start/End: Original strand, 25448892 - 25448932
Alignment:
Q  423 taatcatagatcaggattatatattttcgactctcccaatt 463  Q
    |||||||||||| |||||||||||||| |||||||||||||    
T  25448892 taatcatagatcgggattatatatttttgactctcccaatt 25448932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 25475479 - 25475412
Alignment:
Q  58 attcatgaatctgttgagactcttggaaatctgagctacttaagtttgagagactgcacaaatcttgt 125  Q
    |||||||||||| ||| | |||||| |||||| || | | ||||||||| ||||||||||||||||||    
T  25475479 attcatgaatctattggggctcttgcaaatcttagattcctaagtttgaaagactgcacaaatcttgt 25475412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 25641408 - 25641510
Alignment:
Q  164 aatctttgatttatttggacttaagcttttccaatatttctgaagtaccagatgcgattggagaattagagagtttagaaagactaaatctacacggaaa 263  Q
    |||||||||||| | | ||||||||||||| ||||||||||   || || ||||| |||||||| |||  | ||||||| ||||||||| |||| || ||    
T  25641408 aatctttgatttctcttgacttaagcttttgcaatatttctattgtgcctgatgctattggagagttaaggggtttagagagactaaatttacagggcaa 25641507  T
Q  264 taa 266  Q
    |||    
T  25641508 taa 25641510  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 270
Target Start/End: Complemental strand, 35042326 - 35042221
Alignment:
Q  165 atctttgatttatttggacttaagcttttccaatatttctgaagtaccagatgcgattggagaattagagagtttagaaagactaaatctacacggaaat 264  Q
    ||||||||||| | |||| |||||||||| |||| ||  ||| ||||||||||| ||||||||  ||  | ||||||||||| |||||||||| |||||     
T  35042326 atctttgatttctctggatttaagcttttgcaatcttcatgaggtaccagatgctattggagagctaaggtgtttagaaagagtaaatctacaaggaaac 35042227  T
Q  265 aaattt 270  Q
    ||||||    
T  35042226 aaattt 35042221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 284
Target Start/End: Complemental strand, 496537 - 496434
Alignment:
Q  181 gacttaagcttttccaatatttctgaagtaccagatgcgattggagaattagagagtttagaaagactaaatctacacggaaataaatttacttcaattc 280  Q
    ||||| ||||||| ||||||||| | | |||| ||| | || ||| ||||| ||||||||||||| ||||||||||| |||||| | |||||| || |||    
T  496537 gacttgagcttttgcaatatttcggtattacctgattctataggaaaattaaagagtttagaaaggctaaatctacagggaaatcactttactacacttc 496438  T
Q  281 cttc 284  Q
    ||||    
T  496437 cttc 496434  T

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