View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5325_low_10 (Length: 234)
Name: NF5325_low_10
Description: NF5325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5325_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 780555 - 780354
Alignment:
| Q |
15 |
agcacagacatcacaaaaacttcaaacaaactaaaaattacagattgaaagataaaaggaacgatcaatttagaaaaataacacaaatatatgtcgcagg |
114 |
Q |
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| T |
780555 |
agcacagacatcacaaaaacttcaaacaaactaaaaattacagattgaaagataaaaggaacgatcaatttc-aaaaataacacaaatatatgtcgcagg |
780457 |
T |
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| Q |
115 |
taagatttatcttttgatagtaactccgaatatataactgagtaaaagcttacatcaataattggtggctgccctttgagtccaacttttagatgattct |
214 |
Q |
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| T |
780456 |
taagatttatcttttgatagtaactgcgaatatataactgagtaaaagcttacatcaataattggtggctgccctttgagtccaacttttagatgattct |
780357 |
T |
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| Q |
215 |
tct |
217 |
Q |
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||| |
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| T |
780356 |
tct |
780354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 770921 - 770991
Alignment:
| Q |
147 |
tataactgagtaaaagcttacatcaataattggtggctgccctttgagtccaacttttagatgattcttct |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
770921 |
tataactgagtaaatgcttacatcaataattggtggctgccctttgagtccaacttttagatggttcttct |
770991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 785110 - 785049
Alignment:
| Q |
156 |
gtaaaagcttacatcaataattggtggctgccctttgagtccaacttttagatgattcttct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
785110 |
gtaaaagcttacatcaataattggtggctgccctttgattccaacttttagatggttcttct |
785049 |
T |
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