View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5325_low_11 (Length: 228)
Name: NF5325_low_11
Description: NF5325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5325_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 34 - 197
Target Start/End: Original strand, 4244221 - 4244385
Alignment:
| Q |
34 |
taaatgttttcatacttagtgtcaaaaaataaattagtttccaatgttgaattgaatatgatatatatgataaatgtgttcatatttaatgtcaaaaatg |
133 |
Q |
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| T |
4244221 |
taaatgttttcatattaagtgtcaaaaaatagattagtctccaatgttgaattgaaaatgatatatatgataaatgtgttcatatttaatgtcaaaaatg |
4244320 |
T |
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| Q |
134 |
tctcaaatatgattacttttaatggaacgttatgaattgatactag-cttcaagtgttaaatttt |
197 |
Q |
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|||||| |||||||| ||||| |||||| ||||||||||||||||| |||||||| ||| ||||| |
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| T |
4244321 |
tctcaattatgattagttttagtggaacattatgaattgatactagccttcaagtcttagatttt |
4244385 |
T |
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