View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5325_low_2 (Length: 529)
Name: NF5325_low_2
Description: NF5325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5325_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 26180787 - 26181286
Alignment:
| Q |
1 |
ttgaaacttcaattgacaaggacacctataaatatgagctgttattttaacatcaaaatacaagcaatgtatgtgtttatttaagcataagagatgcact |
100 |
Q |
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| T |
26180787 |
ttgaaacttcaattgacaaggacgcctataaatatgagctgttattttaacatcaaaatacaagcaatgtatgtgtttatttaagcataagagatgcact |
26180886 |
T |
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| Q |
101 |
gtcaactattcattttcaacaaatataccatcattgattcactatggccaacgaacaaggtgatatcaagctttccgtgtagactactggatccgtataa |
200 |
Q |
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| T |
26180887 |
gtcaactattcattttcaacaaata-----------attcactatggccaacgaacaaggtgatatcaagctttccatgtagactactggatccgtataa |
26180975 |
T |
|
| Q |
201 |
gctctatgttgaagctcgagaatgttagaggtataatttctggaatgatagactcccaactgacattgccccgtatcatcatgctgcattagaaactgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26180976 |
gctctatgttgaagctcgagaatgttagaggtataatttctggaatgatagactcccaactgacattgccccgtatcatcatgctgcattagaaactgtt |
26181075 |
T |
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| Q |
301 |
catcctctgaaatatataaaacattggcaatggaatgctgaactgcaatggaaggaatggtgtacaatatatgccatgactctttatttccgaattccat |
400 |
Q |
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| T |
26181076 |
catcctctgaaatatataaaacattggcaatggaatgctgaactgcaatggaaggaatggtgtacaatatatgccatgactctttatttccgaattccat |
26181175 |
T |
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| Q |
401 |
catcatccatatatctgtacccctatcattgcaatcaaatatgcacaagaaatcctttatgacacccaaggtcaaactaccctttcctctagcagtagga |
500 |
Q |
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| T |
26181176 |
catcatccatatatctgtacccctatcattgcaatcaaatatgcacaagaaatcctttaagacacccaaggtcaaactaccctttcctctagaagtagga |
26181275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 1189895 - 1189976
Alignment:
| Q |
1 |
ttgaaacttcaattgacaaggacacctataaatatgagct--gttattttaacatcaaaatacaagcaatgtatgtgtttat |
80 |
Q |
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||||||||||||||||| ||||| |||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| |
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| T |
1189895 |
ttgaaacttcaattgaccaggacccctataaatatgaggtatgttattttaacatcaaaatacatgcaatgtatgtgtttat |
1189976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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