View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5325_low_8 (Length: 293)
Name: NF5325_low_8
Description: NF5325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5325_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 12040321 - 12040583
Alignment:
| Q |
11 |
caaaggtttaacatttccggttgtcgcagataacatataactcaaa-ccataacagtagaaactttcaggagggtagcatgtgtaggtacaaatcttaac |
109 |
Q |
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| T |
12040321 |
caaaggtttaacatttccggttttcgcagataacatataactcaaaaccataacagtagaaactttcaggagggtagcatgtgtaggtacaaatcttaac |
12040420 |
T |
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| Q |
110 |
aaagggaatttataaacctatatggcaatcaactacacaagttgaaaaaggataaaccagtatctaatctaataaactggtataaagtaaggtattgcag |
209 |
Q |
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| T |
12040421 |
aaagggaatttataaacctatatggcaatcaactacacaagttgaaaaaggataaaccagtatctaatctaataaactggtataaagtaaggtattgcag |
12040520 |
T |
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| Q |
210 |
actccaactgaaaaaataaaacacgaagtagaaaacgtagttgtcatatacgacatattaatca |
273 |
Q |
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| T |
12040521 |
actccaactgaaaaaataaaacacgaagtag-aaacgtagttgtcatatacaacatattaatca |
12040583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 61 - 257
Target Start/End: Complemental strand, 12139962 - 12139766
Alignment:
| Q |
61 |
aacagtagaaactttcaggagggtagcatgtgtaggtacaaatcttaacaaagggaatttataaacctatatggcaatcaactacacaagttgaaaaagg |
160 |
Q |
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| T |
12139962 |
aacagtataaactttcaggagggtaacgtga-tgggaataaatcttcacaaagggaatttagaaacctatatggcaatcaactccacaagatgaaaaaca |
12139864 |
T |
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| Q |
161 |
ataaaccagtatctaatctaataa-actggtataaagtaaggtattgcagactccaactgaaaaaataaaacacgaagtagaaaacgtagttgtcata |
257 |
Q |
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| T |
12139863 |
ataaataagtatctaatatactaatactaatataaagtaaggtattgcagactccgactgaaaaaattaaacttgaagtagaaaatgtagttgtcata |
12139766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 12028589 - 12028715
Alignment:
| Q |
18 |
ttaacatttccggttgtcgcagataacatataactcaaa-ccataacagtagaaactttcaggagggtagcatgtgta-ggtacaaatcttaacaaaggg |
115 |
Q |
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| T |
12028589 |
ttaacatttcaggttgtcgcagataacttatagctcaaaaccataacagtagataccttcggggtggtagcatgtgtaaggaacaaatcttcacaagggg |
12028688 |
T |
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| Q |
116 |
aatttataaacctatatggcaatcaac |
142 |
Q |
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| T |
12028689 |
aatttataaacctatatggcaatcaac |
12028715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 12045830 - 12045901
Alignment:
| Q |
18 |
ttaacatttccggttgtcgcagataacatataactcaaa-ccataacagtagaaactttcaggagggtagca |
88 |
Q |
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| T |
12045830 |
ttaacatttcaggttgtcgcggataacttttagcttaaaaccataacagtagaaactttcgggatggtagca |
12045901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 269
Target Start/End: Original strand, 12029288 - 12029368
Alignment:
| Q |
190 |
tataaagtaaggtattgcagactccaactgaaaaaataaaacacgaagtagaaaa-cgtagttgtcatatacgacatatta |
269 |
Q |
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| T |
12029288 |
tataaagtaagtcattgcagactccaactgcaaagattaaactcaaagtaaaaaagcataattgtcatatacaacatatta |
12029368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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