View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5326-Insertion-1 (Length: 505)
Name: NF5326-Insertion-1
Description: NF5326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5326-Insertion-1 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 127 - 505
Target Start/End: Complemental strand, 32708523 - 32708145
Alignment:
| Q |
127 |
gcggtgactgtgccagctgaatcaccaggaaccatctttatgttcatgctaaagtggccaaacaagtatgatcctttagattggaaaccagtacctatgc |
226 |
Q |
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| T |
32708523 |
gcggtgactgtgccagctgaatcaccaggaaccatctttatgttcatgctaaagtggccaaacaagtatgatcctttagattggaaaccagtacctatgc |
32708424 |
T |
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| Q |
227 |
aaaaattgtataaataaattaaaaacgatcacaataatatatcaagtttgcaattaaattaaccaataagccatatattaattgaattttgttctacatg |
326 |
Q |
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| T |
32708423 |
aaaaattgtataaataaattaaaaatgatcacaataatatatcaagtttgcaattaaattaaccaataagccatatattaattgaattttgttctacatg |
32708324 |
T |
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| Q |
327 |
gaaattgattaaggaacatgtagaatacgtaccagtgtatttatcaagaagaagttcaatctcagaaccttcattaaagtatttgatgtgatcaaaagcc |
426 |
Q |
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| T |
32708323 |
aaaattgattaaggaacatgtagaatacgtaccagtgtatttatcaagaagaagttcaatctcagaaccttcattaaagtatttgatgtgatcaaaagcc |
32708224 |
T |
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| Q |
427 |
caagttggtacatagtttcgaccaaaaggtacatctaccggctttcgcggggtggcgctcaaagccgcggacgttagag |
505 |
Q |
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| T |
32708223 |
caagttggtacatagtttcgaccaaaaggtacatctactggctttcgcggggtggcgctcaaagccgcggacgttagag |
32708145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 32717684 - 32717583
Alignment:
| Q |
130 |
gtgactgtgccagctgaatcaccaggaaccatctttatgttcatgctaaagtggccaaacaagtatgatcctttagattggaaaccagtacctatgcaaa |
229 |
Q |
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| T |
32717684 |
gtgactgtgccagctgaatcaccaggaaccatcttaatgttcatactgaaatgaccaaacaagtatgaacctttggactgaaaaccagtacctatacaaa |
32717585 |
T |
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| Q |
230 |
aa |
231 |
Q |
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|| |
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| T |
32717584 |
aa |
32717583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 32714576 - 32714481
Alignment:
| Q |
127 |
gcggtgactgtgccagctgaatcaccaggaaccatctttatgttcatgctaaagtggccaaacaagtatgatcctttagattggaaaccagtacct |
222 |
Q |
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| T |
32714576 |
gcggttaccgtgccagctgaatcaccaggaaccatctttatgttcatactgaaatgaccaaacaagtatgaaccttttgattgaaaaccagtacct |
32714481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 357 - 461
Target Start/End: Complemental strand, 32714262 - 32714158
Alignment:
| Q |
357 |
accagtgtatttatcaagaagaagttcaatctcagaaccttcattaaagtatttgatgtgatcaaaagcccaagttggtacatagtttcgaccaaaaggt |
456 |
Q |
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| T |
32714262 |
accagtgtatttatcaagatgaagttgaatctcagaaccaccattgaagtatttgatatgatcaaaagcccaagttggataatagtttcttccaaatggt |
32714163 |
T |
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| Q |
457 |
acatc |
461 |
Q |
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||||| |
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| T |
32714162 |
acatc |
32714158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 357 - 470
Target Start/End: Complemental strand, 32717450 - 32717337
Alignment:
| Q |
357 |
accagtgtatttatcaagaagaagttcaatctcagaaccttcattaaagtatttgatgtgatcaaaagcccaagttggtacatagtttcgaccaaaaggt |
456 |
Q |
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| T |
32717450 |
accagtgtacttgtcaagatgaagttgaatctcagaaccaccattgaagtatttgatatgatcaaaagcccaagtggggtaatagtttcttccaaatggt |
32717351 |
T |
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| Q |
457 |
acatctaccggctt |
470 |
Q |
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| T |
32717350 |
acatcaactggctt |
32717337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 461
Target Start/End: Original strand, 10381836 - 10381941
Alignment:
| Q |
356 |
taccagtgtatttatcaagaagaagttcaatctcagaaccttcattaaagtatttgatgtgatcaaaagcccaagttggtacatagtttcgaccaaaagg |
455 |
Q |
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| T |
10381836 |
taccagtggatttatcaagattaagcagaatctcagaaccaccatttaagtatttgatatgatcataagcccaagtaggcacataattacgaccaaatgg |
10381935 |
T |
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| Q |
456 |
tacatc |
461 |
Q |
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| T |
10381936 |
aacatc |
10381941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 10380898 - 10380990
Alignment:
| Q |
130 |
gtgactgtgccagctgaatcaccaggaaccatctttatgttcatgctaaagtggccaaacaagtatgatcctttagattggaaaccagtacct |
222 |
Q |
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|||||||| |||||||||||||||| ||||| |||||| ||| |||||||| ||||| || || || ||||| ||||| || ||||||||| |
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| T |
10380898 |
gtgactgttccagctgaatcaccagctaccattcttatgtacatactaaagtgaccaaataaataagaccctttggattgaaagccagtacct |
10380990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 461
Target Start/End: Complemental strand, 10408370 - 10408297
Alignment:
| Q |
388 |
tcagaaccttcattaaagtatttgatgtgatcaaaagcccaagttggtacatagtttcgaccaaaaggtacatc |
461 |
Q |
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| T |
10408370 |
tcagaaccaccatttaagtatttgatatgatcataagcccaagtaggcacataattacgaccaaatggaacatc |
10408297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 10409946 - 10409854
Alignment:
| Q |
130 |
gtgactgtgccagctgaatcaccaggaaccatctttatgttcatgctaaagtggccaaacaagtatgatcctttagattggaaaccagtacct |
222 |
Q |
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| T |
10409946 |
gtgacagttccagctgaatcaccaggtaccatttttatgaacatactaaagtgaccaaataaataagaccctttggattgaaagccggtacct |
10409854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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