View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5326_low_1 (Length: 432)
Name: NF5326_low_1
Description: NF5326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5326_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 6827601 - 6828025
Alignment:
| Q |
1 |
ttgaggagacatggaggattgaagaaattgattttaacatttgtggcttgtcaatggattgttttttgcctccctctgatatcaagaaggaacatgaggc |
100 |
Q |
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| T |
6827601 |
ttgaggagacatggaggattgaagaaattgattttaacatttgtggcttgtcaatggattgttttttgcctccctctgatatcaagaaggaacatgaggc |
6827700 |
T |
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| Q |
101 |
tgtagagcaaattgtgtagtaggaaagagtttggattttccttagctttttcgatcttttttgtcaatcgtaagacaaattttgtacatatgg------- |
193 |
Q |
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| T |
6827701 |
tgtagagcaaattgtgtagtaggaaagagtttggattttccttacctttttcaatcttttttgtcaaccgtaagacaaattttgtacatatggtatagaa |
6827800 |
T |
|
| Q |
194 |
-tatagaagcaaatcatagctgaatacgaaaatatttctctaggtctttggttcgatgtttagcacnnnnnnnnacgaggcattttaggactttgttgtc |
292 |
Q |
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| T |
6827801 |
ctatagaagcaaatcatagctgaatacgaaaatatttctctaggtctttggttcgatgtttagcacttttttttacgaggcattttaggactttgttgtc |
6827900 |
T |
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| Q |
293 |
aaatcgaaaagaatgttaaacttcataaacaaggcaaagattatcaatatcttagcaaagaatgt---tatgattgattgccattgcatttaaggagtct |
389 |
Q |
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| T |
6827901 |
aaatcgaaaagaatgttaaacttcataaacaaggcaaagattatcaatattttatcaaagaatgttagtatgattgattgccattgcatttaaggagttt |
6828000 |
T |
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| Q |
390 |
gggtgagaattctaaccaattgttg |
414 |
Q |
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| T |
6828001 |
gggtgagaattctaaccaattgttg |
6828025 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 52297293 - 52297356
Alignment:
| Q |
1 |
ttgaggagacatggaggattgaagaaattgattttaacatttgtggcttgtcaatggattgttt |
64 |
Q |
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||||||| | |||||| ||||||||| ||||||||||||||| ||| ||||| ||||||||||| |
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| T |
52297293 |
ttgaggaaatatggagtattgaagaagttgattttaacatttttggattgtctatggattgttt |
52297356 |
T |
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