View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5326_low_2 (Length: 408)
Name: NF5326_low_2
Description: NF5326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5326_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 15 - 392
Target Start/End: Complemental strand, 1611565 - 1611188
Alignment:
| Q |
15 |
gagtcgaagaggtttgttgatctatgtggcaatttcagtaaaatgcacattggtggtagtaatggtaatcaacatcaagagaatgctagtaatgttaatg |
114 |
Q |
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| T |
1611565 |
gagtcaaagaggtttgttgatctatgtggcaatttcagtaaaatgcacattggtggtagtaatggcaatcaacatcaagagaatgctagtaatgttaatg |
1611466 |
T |
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| Q |
115 |
attttacttttttgaatccaatcaatgttgataattttaataatcatgataagtatgtggattttgatggttataagagaggttttttggattctgatca |
214 |
Q |
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| T |
1611465 |
attttacttttttgaatccaatcaatgttgataattttaataatcatgataagtatgtggattttgatggttataagagaggttttttggattctgatta |
1611366 |
T |
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| Q |
215 |
tgtggggtttcagtcctctatgttgagaagccctatcaaccatcatggagctgaaaggaattcggcattaagccgagattacgaagtagctaattcattt |
314 |
Q |
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| T |
1611365 |
tgtggggtttcagtcctctatgttgagaagccctatcaatcatcatggagctgaaaggaattcggcattaagccgagattacgaagtagctaattcattt |
1611266 |
T |
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| Q |
315 |
ggatcagtaggacttgtccgtgggttgcgcttgcgagacattacgtactctcaattgaatggttttggtggttcaatg |
392 |
Q |
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| T |
1611265 |
ggatcagtaggacttgtccgtgggttgcgcttgcgagacattacgtactctcaattgaatggttttggtggttcaatg |
1611188 |
T |
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