View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5326_low_3 (Length: 354)
Name: NF5326_low_3
Description: NF5326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5326_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 49666252 - 49666578
Alignment:
| Q |
18 |
gaagaaggctgcgctagagggtcatcatgaagccaaatatgtttattctatgcttttgatggctaattgtgatgatgaagaaggaagaaaacttgggttt |
117 |
Q |
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| T |
49666252 |
gaagaaggctgcgctagagggtcatcatgaagccaaatatgtttattctatgcttttgatggctaattgtgatgatgaagaaggaagaaaacttgggttt |
49666351 |
T |
|
| Q |
118 |
gatctctttgatgagttgaagaattccacaggcattactattgtaggttgtagaaagagggtgaagtcttttattcaaagcatgtgggtgaagaatgttg |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49666352 |
gatctctttggtgagttgaagaattccacaggcattactattgtgggttgtagaaagagggtgaagtcttttattcaaagcatgtgggtgaagaatgttg |
49666451 |
T |
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| Q |
218 |
tggtggctcaaaatcaaggactctctttgtgttcttctagcacatgccacaaccctaagacagagaaggtggtggtgaagaaacactcaacatggtttat |
317 |
Q |
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| T |
49666452 |
tggtggctcaaaatcaaggactctctttgtgttcttctagcacatgccacaaccctaagacagagaaggtggtggtgaagaaacactcaacatggtttat |
49666551 |
T |
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| Q |
318 |
ggatgaaagtgataatgatgatgatgt |
344 |
Q |
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| T |
49666552 |
ggatgaaagtgataatgatgatgatgt |
49666578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 50936136 - 50935972
Alignment:
| Q |
18 |
gaagaaggctgcgctagagggtcatcatgaagccaaatatgtttattctatgcttttgatggctaattgtgatgatgaagaaggaagaaaacttgggttt |
117 |
Q |
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| T |
50936136 |
gaagaagactgcactagagggtcatcatgaagccaaatatgtttattctatgcttttgatggctaattgtgatgatgatgaaggaagaaaacttgggttt |
50936037 |
T |
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| Q |
118 |
gatctctttgatgagttgaagaattccacaggcattactattgtaggttgtagaaagagggtgaa |
182 |
Q |
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| T |
50936036 |
gatctctttgatgagttaaagaattccacgggcattactattgtggggtgtagaaagagggtgaa |
50935972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 184 - 340
Target Start/End: Complemental strand, 50911737 - 50911584
Alignment:
| Q |
184 |
tcttttattcaaagcatgtgggtgaagaatgttgtggtggctcaaaatcaaggactctctttgtgttcttctagcacatgccacaaccctaagacagaga |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||||||||| | ||||||||||||| |||||||||||||||||| ||| ||||| |
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| T |
50911737 |
tcttttattcaaagcatgtgggtgaagaatgttgtggtgtctccaaatcaaggattgtctttgtgttcttttagcacatgccacaacccatagagagaga |
50911638 |
T |
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| Q |
284 |
aggtggtggtgaagaaacactcaacatggtttatggatgaaagtgataatgatgatg |
340 |
Q |
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|||| ||||||||||||||||| |||||||| ||||||| |||||||||||||| |
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| T |
50911637 |
aggt---ggtgaagaaacactcaatatggtttaaggatgaatttgataatgatgatg |
50911584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 46606847 - 46606794
Alignment:
| Q |
287 |
tggtggtgaagaaacactcaacatggtttatggatgaaagtgataatgatgatg |
340 |
Q |
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| T |
46606847 |
tggtggtgaagaaacactcaacatggtttatggatgaatttgataatgatgatg |
46606794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 14573000 - 14573239
Alignment:
| Q |
18 |
gaagaaggctgcgctagagggtcatcatgaagccaaatatgtttattctatgcttttgatggctaattgtgatgatgaagaaggaagaaaacttgggttt |
117 |
Q |
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|||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | | |
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| T |
14573000 |
gaagaaggctgcattagagggtcatcatgatgcgaaatatgtttattctatgcttttgatggctaattgtgaagacgaagaaggaagaaaacttggttat |
14573099 |
T |
|
| Q |
118 |
gatctctttgatgagttgaagaattccacaggcattactattgtaggttgtagaaagagggtgaagtcttttattcaaagcatgtgggtgaagaatgttg |
217 |
Q |
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|||||||||| ||| ||||| ||||||||| |||||| |||| | || |||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
14573100 |
gatctctttggtgaattgaaaaattccacatgcattagtattaca------aggaagagggtgaagtcttttattcaaagcatgtgggtgaaaaatcatg |
14573193 |
T |
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| Q |
218 |
tggtggctcaaaatcaaggactctctttgtgttcttctagcacatg |
263 |
Q |
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| T |
14573194 |
tggtggttcaaaatcaagcagtgtctttgtgttgttctagcacatg |
14573239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 36 - 263
Target Start/End: Original strand, 34304887 - 34305114
Alignment:
| Q |
36 |
gggtcatcatgaagccaaatatgtttattctatgcttttgatggctaattgtgatgatgaagaaggaagaaaacttgggtttgatctctttgatgagttg |
135 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||| ||| ||| ||||| ||||||| | |||||||||||||||| ||| || |
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| T |
34304887 |
gggtcatcatgaagctaaatatgtatattctatgcttttgatggctaatgctgaaaatggagaagaaagaaaattagggtttgatctctttggtgaactg |
34304986 |
T |
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| Q |
136 |
aagaattccacaggcattactattgtaggttgtagaaagagggtgaagtcttttattcaaagcatgtgggtgaagaatgttgtggtggctcaaaatcaag |
235 |
Q |
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|| ||||| | |||||| | |||| |||| || ||||| ||| |||| |||||| ||||||||||| ||| ||| ||||||| ||||||||||| |
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| T |
34304987 |
aaaaattcatcgtgcattagtcttgtgagttgcaggaagagagtgcagtcatttattaaaagcatgtggttgagaaattcggtggtggttcaaaatcaag |
34305086 |
T |
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| Q |
236 |
gactctctttgtgttcttctagcacatg |
263 |
Q |
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| | |||||||||| |||||||||||| |
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| T |
34305087 |
aattgtctttgtgttgttctagcacatg |
34305114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 31001357 - 31001260
Alignment:
| Q |
32 |
tagagggtcatcatgaagccaaatatgtttattctatgcttttgatggctaattgtgatgatgaagaaggaagaaaacttgggtttgatctctttgat |
129 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | || | |||||||| |||| | || ||||||||||||||| |
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| T |
31001357 |
tagagggtcatcatgaagctaaatatgtttattctatgcttttgatggctaattctaacgacggagaaggaataaaattgggctttgatctctttgat |
31001260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 30997397 - 30997354
Alignment:
| Q |
35 |
agggtcatcatgaagccaaatatgtttattctatgcttttgatg |
78 |
Q |
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| T |
30997397 |
agggtcatcatgaagtgaaatatgtttattctatgcttttgatg |
30997354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 31001223 - 31001155
Alignment:
| Q |
180 |
gaagtcttttattcaaagcatgtgggtgaagaatgttgtggtggctcaaaatcaaggactctctttgtg |
248 |
Q |
| |
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|||||||||||||||||||||||| ||||| ||| |||||| | ||||||||||| | | |||||||| |
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| T |
31001223 |
gaagtcttttattcaaagcatgtgagtgaaaaatcatgtggttgttcaaaatcaagaattgtctttgtg |
31001155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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