View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5327-Insertion-1 (Length: 537)
Name: NF5327-Insertion-1
Description: NF5327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5327-Insertion-1 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 50 - 537
Target Start/End: Original strand, 13945 - 14414
Alignment:
| Q |
50 |
caatgtttataattaaaagtaaaaataagaaatgaatacaaagaatgaaaacaaagatcaaacaagggatcaagattatggtcactgtcatggtggtggt |
149 |
Q |
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| T |
13945 |
caatgtttataattaaaagtaaaaataagaaatgaatacaaagaatgaaaacaaagatcaaacaagggatcaagattctggtcactgtcatggtggtggt |
14044 |
T |
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| Q |
150 |
tactcagatgaacatatttaaagaaaagtttacaagtttgatgattttgatatttagagttctagattttgacaatgtgctgtcaaaaggcattgattaa |
249 |
Q |
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| T |
14045 |
tactcagatgaacatatttaaagaaaagtttacaagtttgatgattttgatatttagagttctagattttgacaatgtgctgtcaaaaggcattgat--- |
14141 |
T |
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| Q |
250 |
cagactaatttctagattacaacaatttgcacttcgtctgcttcactcgttacgctttcagatccactcgctctgctgcgctacattcgagcgtctgttt |
349 |
Q |
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| T |
14142 |
---------------attacaacaatttgcacttcgtctgcttcactcgttacgctttcagatccactcgctctgctgcgctacattcgagcgtctgttt |
14226 |
T |
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| Q |
350 |
acttatcaacgaatatatgtcacttattaacatagttgccaactgttaatttgtaggtgtaactttttggtactacaaaatcaattttaaacgatctcaa |
449 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14227 |
acttatcaacgaatatatgtcacttattaacatagttgccaactgttaatttgtaggtgtaactttttggtactacaaaatcaattttaaacgatctcaa |
14326 |
T |
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| Q |
450 |
ccgttaatttgtgtgacgcaattactacattaaattcaaatccttctaatatgagaacacatgtagactttgatccaaaattaatgca |
537 |
Q |
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| T |
14327 |
ccgttaatttgtgtgacgcaattactacattaaattcaaatccttctaatatgagaacacatgtagactttgatccaaaattaatgca |
14414 |
T |
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