View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5327_high_4 (Length: 320)
Name: NF5327_high_4
Description: NF5327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5327_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 23930877 - 23930577
Alignment:
| Q |
1 |
ttgtgtattctcacccaaaccatataaagaagcatctttaggtaattttgttgaaatctcaagatattggtctttgaaaacaagtgaactaaatgggtct |
100 |
Q |
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| T |
23930877 |
ttgtgtattctctcccaaaccatataaagatgcatctttaggtaattttgttgaaatctcaagatattggtctttgaaaacaagtgaactaaatgggtct |
23930778 |
T |
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| Q |
101 |
gaagaagttgaagttgagttgaaaagggtttcaccatttgattttcttttgactgagaaactaaagggatttgaaatgtagctgaatagaagctctgagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23930777 |
gaagaagttgaagttgagttgaaaagggtttcaccatttgattttcttttgactgagaaactaaagggatttgaaatgtagctgaatagaagctctgagc |
23930678 |
T |
|
| Q |
201 |
ctgaatactctgagacttcaatagggnnnnnnnggaactttcctaaggtttgtggtaatggtggtggttgttctcttgggataaggttgtatggtacttc |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23930677 |
ctgaatactctgagacttcaatagggtttttttggaactttcctaaggtttgtggtaatggtggtggttgttctcttgggataaggttgtatggtacttc |
23930578 |
T |
|
| Q |
301 |
c |
301 |
Q |
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| T |
23930577 |
c |
23930577 |
T |
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