View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5327_high_7 (Length: 241)
Name: NF5327_high_7
Description: NF5327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5327_high_7 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 51496892 - 51496669
Alignment:
| Q |
18 |
aatattcgctcaccatcagtcacaacaataacttgaatagtcttttctggccagtttttaagtacctcaaggattttgcctctgaaaaaattcaagtgct |
117 |
Q |
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| T |
51496892 |
aatattcgctcaccatcagtcacaacaataacttgaatagtcttttctggccagtttttaagtacctcaaggattttgcctctgaaaaaattcaagtgct |
51496793 |
T |
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| Q |
118 |
tagaattttctcatctaaaatgctaagctaacaaacaaaataaggctgacaagnnnnnnnntacgtacttctccttcaaacttatatatagaccctgagg |
217 |
Q |
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| T |
51496792 |
tagaattttctcatctaaaatgctaagctaacaaacaaaataaggctgacaagaaaaaaaatacgtacttctccttcaaacttatatatagaccctgagg |
51496693 |
T |
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| Q |
218 |
acgcctataaatgcttccatattt |
241 |
Q |
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| T |
51496692 |
acgtctataaatgcttccatattt |
51496669 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 43208553 - 43208611
Alignment:
| Q |
183 |
tacttctccttcaaacttatatatagaccctgaggacgcctataaatgcttccatattt |
241 |
Q |
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| T |
43208553 |
tacttctctttcaaactaatatatagaccctgaggacgcttgtatatgctcccatattt |
43208611 |
T |
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