View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5327_low_1 (Length: 784)
Name: NF5327_low_1
Description: NF5327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5327_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 506
Target Start/End: Original strand, 32272430 - 32272916
Alignment:
| Q |
18 |
acaacatgtttataaggtttgcgagttttaaattatattatctttatcatccgatgtttgttctctctcctcgggaccattgttcatactaaatgttttc |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32272430 |
acaacatgtttataaggtttgcaagttttaaattatattatctttctcatccgatgtttgttctctctcctcgggaccattgttcatactcaatgttttc |
32272529 |
T |
|
| Q |
118 |
ttttgacaagatcacactcaatgttatatggtgtcaagatacggtgtcggaaatcatatgtactaataacactattatttataaaagtaacaatatgtca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32272530 |
ttttgacaagatcacactcaatgttatatggtgtcaagatacggtgtcggaaatcatatgtactaataacact--tatttataaaagtaacaatatgtca |
32272627 |
T |
|
| Q |
218 |
gtatctatgcaatgctgaatagtatgattttttaatttaacaaaaggatctgtgcttttcaattgagaaaataataaaagaatattaaatccatagaaca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32272628 |
gtatctatgcaatgctgaatagtatgattttttaatttaacaaaaggatctgtgcttttcaattgagaaaataataaaagaatattaaatccatagaaca |
32272727 |
T |
|
| Q |
318 |
ttctcaaatatagaatattcaattgtacatgaatgaaatcttgtgtgtttttctatacacatgcagacatattaaacaagagaaagaatgagattaagaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32272728 |
ttctcaaatatagaatattcaattgtacatgaatgaaatcttgtgtgtttttctatacacatgcagacatattaaacaagagaaagaatgagattaagaa |
32272827 |
T |
|
| Q |
418 |
taatactataagaattgtggcatatactaataaaataaggtagcaagatctaggacaaaacattacattaacacaaataataacaacct |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32272828 |
taatactataagaattgtggcatatactaataaaataaggtagcaagatctaggacaaaacattacattaacacaaataataacaacct |
32272916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 606 - 729
Target Start/End: Original strand, 32273016 - 32273139
Alignment:
| Q |
606 |
ctcgttgtacttgtttctgtttctgagggaacaaggaaataggaatgagtctcgaagcaacatgcggatctatttactataataatgaaaaacaatgcta |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32273016 |
ctcgttgtacttgtttctgtttctgagggaacaaggaaataggaatgagtctcgaagcaacatgcggatctatttactataataatgaaaaacaatgcta |
32273115 |
T |
|
| Q |
706 |
aatttgatgcaatgtcgtaaaaca |
729 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
32273116 |
aatttgatgcaatgtcgtaaaaca |
32273139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University