View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5327_low_10 (Length: 238)
Name: NF5327_low_10
Description: NF5327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5327_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25746777 - 25746998
Alignment:
| Q |
1 |
ctttatcttccagcgtcacattcttccacccaataggactcttgttcgtgtccagcttgaaaacttcaacgctggtaacatgaggtggattagtatatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25746777 |
ctttatcttccagcgtcacattcttccacccaataggactcttgttcgtgtccagcttgaaaacttcaacgctggtaacatgaggtggattagtatatgc |
25746876 |
T |
|
| Q |
101 |
tgtgatatttccgttgaaacggtaagagacaaattgttcagcttcaaactcacgattatagtacatagaaatgacgtataactctcttaacgttttatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25746877 |
tgtgatatttccgttgaaacggtaagagacaaattgttcagcttcaaactcacgattatagtacatagaaatgaagtataactctcttaacgttttatct |
25746976 |
T |
|
| Q |
201 |
ttggctagaaaactgatatatg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
25746977 |
ttggctagaaaactgatatatg |
25746998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 25755339 - 25755547
Alignment:
| Q |
1 |
ctttatcttccagcgtcacattcttccacccaataggactcttgttcgtgtccagcttgaaaacttcaacgctggtaacatgaggtggattagtatatgc |
100 |
Q |
| |
|
||||||| |||||| ||||||||| ||||||||| |||||||| ||||||||||||||||| ||||||| || ||||||||||||||| |||| |||||| |
|
|
| T |
25755339 |
ctttatcatccagcctcacattctgccacccaatcggactcttattcgtgtccagcttgaacacttcaaagcaggtaacatgaggtggcttagcatatgc |
25755438 |
T |
|
| Q |
101 |
tgtgatatttccgttgaaacggtaagagacaaattgttcagcttcaaactcacgattatagtacatagaaatgacgtataactctcttaacgttttatct |
200 |
Q |
| |
|
| |||| | | ||||||||| ||||||| ||| || ||||| ||||| ||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25755439 |
taagataatac---tgaaacggtcggagacaacacgttgagtttcaatctcacaattatagaacatagaaatgaagtataactctcttaacgttttatct |
25755535 |
T |
|
| Q |
201 |
ttggctagaaaa |
212 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
25755536 |
ttagctagaaaa |
25755547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 25763289 - 25763495
Alignment:
| Q |
4 |
tatcttccagcgtcacattcttccacccaataggactcttgttcgtgtccagcttgaaaacttcaacgctggtaacatgaggtggattagtatatgctgt |
103 |
Q |
| |
|
||||||| ||| ||||||||| ||||||||||||||||||||| | |||||||||||| ||||||| ||||||||| |||||||| || | | |||||| |
|
|
| T |
25763289 |
tatcttcgagcttcacattctgccacccaataggactcttgtttgcgtccagcttgaacacttcaaagctggtaacctgaggtggctttgaaaatgctga |
25763388 |
T |
|
| Q |
104 |
gatatttccgttgaaacggtaagagacaaattgttcagcttcaaactcacgattatagtacatagaaatgacgtataactctcttaacgttttatctttg |
203 |
Q |
| |
|
||| | |||||||||| ||||||| ||||| || ||||| ||||| ||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25763389 |
gatgact---ttgaaacggtcagagacatgttgttgagtttcaatctcaccattatagaacatagaaatgaaatataactctcttaacgttttatctttg |
25763485 |
T |
|
| Q |
204 |
gctagaaaac |
213 |
Q |
| |
|
|||||||||| |
|
|
| T |
25763486 |
gctagaaaac |
25763495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 25732897 - 25733114
Alignment:
| Q |
1 |
ctttatcttccagcgtcacattcttccacccaataggactcttgttcgtgtccagcttgaaaacttcaacgctggtaacatgaggtggattagtatatgc |
100 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||| ||||||| |||||||| | |||||| ||| | ||| |
|
|
| T |
25732897 |
ctttatcttccagcttcacattctgccacccaataggactcttattcgtgtccagcttgaacacttcaaagctggtaagcttaggtggcttaacaaatga |
25732996 |
T |
|
| Q |
101 |
tgtgatatttccgttgaaacggtaagagacaaattgttcagcttcaaactcacgattatagtacatagaaatgacgtataactctcttaacgttttatct |
200 |
Q |
| |
|
|| || | | |||||||||| ||||| | |||||||| |||| ||||| ||||||| ||| | |||||| ||||||||||||||||||||||||| |
|
|
| T |
25732997 |
tgagaca---acattgaaacggtcagagatatgttgttcagtatcaatctcaccattatagaacacataaatgaggtataactctcttaacgttttatct |
25733093 |
T |
|
| Q |
201 |
ttggctagaaaactgatatat |
221 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
25733094 |
ttggctagaaaactgctatat |
25733114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 25740598 - 25740809
Alignment:
| Q |
1 |
ctttatcttccagcgtcacattcttccacccaataggactcttgttcgtgtccagcttgaaaacttcaacgctggtaacatgaggtggattagtatatgc |
100 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||| || |||||||||||||| ||||||| |||||||| | |||||| ||| | ||| |
|
|
| T |
25740598 |
ctttatcttccagcttcacattctgccacccaataggactcttatttgtgtccagcttgaacacttcaaagctggtaagcttaggtggcttaacaaatga |
25740697 |
T |
|
| Q |
101 |
tgtgatatttccgttgaaacggtaagagacaaattgttcagcttcaaactcacgattatagtacatagaaatgacgtataactctcttaacgttttatct |
200 |
Q |
| |
|
|| || | | |||||||||| ||| | | |||||||| |||| ||||| ||||||| ||| |||||||| |||||||||||||||| |||||||| |
|
|
| T |
25740698 |
tgagaca---acattgaaacggtcagatatatgttgttcagtatcaatctcaccattatagaacacagaaatgaggtataactctcttaacattttatct |
25740794 |
T |
|
| Q |
201 |
ttggctagaaaactg |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25740795 |
ttggctagaaaactg |
25740809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 30149639 - 30149574
Alignment:
| Q |
4 |
tatcttccagcgtcacattcttccacccaataggactcttgttcgtgtccagcttgaaaacttcaa |
69 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||| | ||||| ||||||||||||||| ||||||| |
|
|
| T |
30149639 |
tatcttccagcttcacattctgccatccaatagaatccttgtccgtgtccagcttgaagacttcaa |
30149574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 30154378 - 30154313
Alignment:
| Q |
4 |
tatcttccagcgtcacattcttccacccaataggactcttgttcgtgtccagcttgaaaacttcaa |
69 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||| | ||||| |||||||||||||| ||||||| |
|
|
| T |
30154378 |
tatcttccagcttcacattctgccatccaatagaatccttgtcagtgtccagcttgaagacttcaa |
30154313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 30155971 - 30155906
Alignment:
| Q |
4 |
tatcttccagcgtcacattcttccacccaataggactcttgttcgtgtccagcttgaaaacttcaa |
69 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||| | ||||| | ||||||||||||| ||||||| |
|
|
| T |
30155971 |
tatcttccagcttcacattctgccatccaatagaatccttgtccatgtccagcttgaagacttcaa |
30155906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 8295010 - 8294966
Alignment:
| Q |
169 |
aaatgacgtataactctcttaacgttttatctttggctagaaaac |
213 |
Q |
| |
|
|||||| |||||||||||| |||| || ||||||||||||||||| |
|
|
| T |
8295010 |
aaatgaagtataactctctcaacgcttcatctttggctagaaaac |
8294966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University