View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5327_low_2 (Length: 397)
Name: NF5327_low_2
Description: NF5327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5327_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 15160814 - 15161180
Alignment:
| Q |
18 |
agaattagcaatcaaatcttacatactgatcatactatactcatatagtatgatgaaagtaactcataataatcatgacattaagatcattaaacattaa |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15160814 |
agaattagcaatcaaatcttgcatactgatcatactatactcatatagtatgatgaaagtaactcataataatcatgacattaagatcattaaacattaa |
15160913 |
T |
|
| Q |
118 |
gatcactaaacacattgaaatg-atttatagggagagactcacgcacatctgatgccttaatcggtttccctatatcaactctgacctaaatcaatttat |
216 |
Q |
| |
|
|||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15160914 |
gatcactaaacacattgaaacggatttctagggagagactcacgcacatctgatgccttaatcggtttccctatatcaactctgacctaaatcaatttat |
15161013 |
T |
|
| Q |
217 |
attatcatcaatcaagctaaagaagcagaaacaattcaaaataagcttgacattaaacaacttattggaagcaccttgtttatgcctctgaacaaactac |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
15161014 |
attatcatcaatcaagctaaagaagcagaaacaatacaaaataagcttgacattaaacaacttatgggaagcaccatgtttatgcctctgaacaaactac |
15161113 |
T |
|
| Q |
317 |
attgtcaaaaagtaaattgcaaatattttgttgtatataagaataagaccatacaattccatcctccta |
385 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15161114 |
attgtcaaaaagtaaattgcaaata-tttgttgtatat-agaataagaccatacaattccatcctccta |
15161180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 40249924 - 40249985
Alignment:
| Q |
179 |
cggtttccctatatcaactctgacctaaatcaatttatattatcatcaatcaagctaaagaa |
240 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40249924 |
cggttcccccatatcaactctgacctaaatcaattagtattatcatcaatcaagctaaagaa |
40249985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 320 - 380
Target Start/End: Original strand, 40250097 - 40250156
Alignment:
| Q |
320 |
gtcaaaaagtaaattgcaaatattttgttgtatataagaataagaccatacaattccatcc |
380 |
Q |
| |
|
|||||||||||||||||||||| |||| || |||||||||||||| |||||| |||||||| |
|
|
| T |
40250097 |
gtcaaaaagtaaattgcaaata-tttgctgcatataagaataagaacatacatttccatcc |
40250156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 26880363 - 26880403
Alignment:
| Q |
206 |
aatcaatttatattatcatcaatcaagctaaagaagcagaa |
246 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||| |||| |
|
|
| T |
26880363 |
aatcaatttgtattatcatccatcaagctaaagaagtagaa |
26880403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 14369882 - 14369937
Alignment:
| Q |
18 |
agaattagcaatcaaatcttacatactgatcatactatactcatatagtatgatga |
73 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
14369882 |
agaattagcaataaaatcttacataatgatcatactatactcatatagtataatga |
14369937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 32266233 - 32266289
Alignment:
| Q |
201 |
acctaaatcaatttatattatcatcaatcaagctaaagaagcagaaacaattcaaaa |
257 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
32266233 |
accttaattaatttatattatcatcaatcaagctaaagaaccagaaacaatacaaaa |
32266289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 24846753 - 24846712
Alignment:
| Q |
32 |
aatcttacatactgatcatactatactcatatagtatgatga |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24846753 |
aatcttacatactgatcatactatactcatatagtttgatga |
24846712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 26465461 - 26465505
Alignment:
| Q |
18 |
agaattagcaatcaaatcttacatactgatcatactatactcata |
62 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
26465461 |
agaattagcaatctaatcttacatattgatcatactatactcata |
26465505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University