View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5327_low_5 (Length: 279)

Name: NF5327_low_5
Description: NF5327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5327_low_5
NF5327_low_5
[»] chr1 (3 HSPs)
chr1 (10-279)||(47811503-47811772)
chr1 (10-279)||(47788191-47788457)
chr1 (10-240)||(47781977-47782204)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 10 - 279
Target Start/End: Original strand, 47811503 - 47811772
Alignment:
Q  10 caattggatggtacgaggctgatcagaaatgcatgctgcgttattcagaccgttcgatattaggcctcagtgaaatgtggcctgctataatttggtggaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47811503 caattggatggtacgaggctgatcagaaatgcatgctgcgttattcagaccgttcgatattaggcctcagcgaaatgtggcctgctataatttggtggaa 47811602  T
Q  110 cgtgaacaatgcaactttggcagatcaattcaatagtgtgatgaaacaattgttgaatgatttaaaaaacaaggctataaatggtgactcacatcgtaag 209  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47811603 cgtgaacaatgcaactttggcagatcaattcaatagtgtgataaaacaattgttgaatgatttaaaaaacaaggctataaatggtgactcacatcgtaag 47811702  T
Q  210 tatgctgtaggaactttgccaggtcctagtagtgatctaacaataaatggtcttgttcagtgtacacctg 279  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47811703 tatgctgtaggaactttgccaggtcctagtagtgatcaaacaataaatggtcttgttcagtgtacacctg 47811772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 279
Target Start/End: Original strand, 47788191 - 47788457
Alignment:
Q  10 caattggatggtacgaggctgatcagaaatgcatgctgcgttattcagaccgttcgatattaggcctcagtgaaatgtggcctgctataatttgg-tgga 108  Q
    |||||||||||||||||| |||   |||||| ||| | ||||||||||||||||| ||| | || || |  |||||  | |||||| || ||||  ||||    
T  47788191 caattggatggtacgaggatga---gaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgct-tattttgcatgga 47788286  T
Q  109 acgtgaacaatgcaactttggcagatcaattcaatagtgtgatgaaacaattgttgaatgatttaaaaaacaaggctataaatggtgactcacatcgtaa 208  Q
    || |||||||||||||  ||||||||||||| ||||   || | |||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  47788287 acttgaacaatgcaacaatggcagatcaatttaatatcttggtaaaacaattgttgaatgatttaagaagcaaggctataaatggtgactcacatcgtaa 47788386  T
Q  209 gtatgctgtaggaactttgccaggtcctagtagtgatctaacaataaatggtcttgttcagtgtacacctg 279  Q
    ||||| ||| ||||   |||| |||||||||||||||| ||||||| ||||||||||||||||||| ||||    
T  47788387 gtatgttgtgggaaaaatgccgggtcctagtagtgatcaaacaatatatggtcttgttcagtgtactcctg 47788457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 47781977 - 47782204
Alignment:
Q  10 caattggatggtacgaggctgatcagaaatgcatgctgcgttattcagaccgttcgatattaggcctcagtgaaatgtggcctgct-ataatttggtgga 108  Q
    |||||||||||||||||| |||   |||||||||| | ||||||||||||||||| ||||||||||| |  |||||  |||| ||| ||| | || ||||    
T  47781977 caattggatggtacgaggatga---gaaatgcatgttacgttattcagaccgttctatattaggcctaaacgaaattgggccagcttatactatg-tgga 47782072  T
Q  109 acgtgaacaatgcaactttggcagatcaattcaatagtgtgatgaaacaattgttgaatgatttaaaaaacaaggctataaatggtgactcacatcgtaa 208  Q
    ||  |||||| |||||  ||||||||||| | | ||   |  | | |||| | || |||||||||| || ||||||||||||||||||||||||| ||||    
T  47782073 actcgaacaacgcaacaatggcagatcaacttagtatcttagtaacacaactattaaatgatttaagaagcaaggctataaatggtgactcacatagtaa 47782172  T
Q  209 gtatgctgtaggaactttgccaggtcctagta 240  Q
    ||||| ||| ||||| | ||| ||||||||||    
T  47782173 gtatgttgttggaacatcgccgggtcctagta 47782204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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