View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5327_low_6 (Length: 263)
Name: NF5327_low_6
Description: NF5327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5327_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 23930873 - 23931124
Alignment:
| Q |
1 |
cacaaccacatggtattaagttatatccaagtgacccttatactttatatacaacagatatttcagctattaatcttaatgctgatttatatggatctca |
100 |
Q |
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| T |
23930873 |
cacaaccacatgggattaaattatatccaagtgacccttatactttatatacaacagatatttcagctattaatcttaatgctgatttatatggatctca |
23930972 |
T |
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| Q |
101 |
tcctatgtatatggatctgagaaataatggtggaaaagcttcagcacatgctgttttgttgttgaatagtaatggaatggatgtgttttataaaggaact |
200 |
Q |
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| T |
23930973 |
tcctatgtatatggatctgagaaataatggtggaaaagcttctgcacatgctgttttgttgttgaatagtaatggaatggatgtgttttataaaggaact |
23931072 |
T |
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| Q |
201 |
tctttgacttataaggttattggtggtgtttttgatttttacttcttctctg |
252 |
Q |
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| T |
23931073 |
tctttgacttataaggttattggtggtgtttttgatttttacttcttctctg |
23931124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 50121911 - 50121665
Alignment:
| Q |
1 |
cacaaccacatggtattaagttatatccaagtgacccttatactttatatacaacagatatttcagctattaatcttaatgctgatttatatggatctca |
100 |
Q |
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|||||||| |||| || |||||| |||||| ||| ||||| ||||| |||||||| ||||| ||||||||||| || ||| |||||||||||||||| || |
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| T |
50121911 |
cacaaccaaatggaatgaagttacatccaaatgatccttacactttgtatacaactgatatatcagctattaacctcaattctgatttatatggatcaca |
50121812 |
T |
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| Q |
101 |
tcctatgtatatggatctgagaaataatggtggaaaagcttcagcacatgctgttttgttgttgaatagtaatggaatggatgtgttttataaaggaact |
200 |
Q |
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| T |
50121811 |
tcctgtatacatggatctcagaaattatggtggaaaaccttatgcacatggtgttcttttgttgaatagcaatggaatggatgtgttttacaaagggaac |
50121712 |
T |
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| Q |
201 |
tctttgacttataaggttattggtggtgtttttgatttttacttctt |
247 |
Q |
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| T |
50121711 |
tctttgacatacaagattattggaggaatacttgatttttacttctt |
50121665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 50112333 - 50112084
Alignment:
| Q |
1 |
cacaaccacatggtattaagttatatccaagtgacccttatactttatatacaacagatatttcagctattaatcttaatgctgatttatatggatctca |
100 |
Q |
| |
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|||| |||||||| || ||||| ||||| | ||| ||||||||||| ||||| || ||| | |||| |||||||| || ||||| ||||||| ||||| |
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| T |
50112333 |
cacagccacatgggataaagttgtatcctaatgatccttatactttgtataccactgatgtagcagccattaatctcaacactgatctatatgggtctca |
50112234 |
T |
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| Q |
101 |
tcctatgtatatggatctgagaaataatg---gtggaaaagcttcagcacatgctgttttgttgttgaatagtaatggaatggatgtgttttataaagga |
197 |
Q |
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|||| | || |||||||| |||||| ||| |||| || || ||||||| |||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
50112233 |
tcctgtatacatggatcttagaaatcatgaaggtggcaagcctaatgcacatggtgttttgttgttgaatagcaatggaatggatgtgttttacaaaggg |
50112134 |
T |
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| Q |
198 |
acttctttgacttataaggttattggtggtgtttttgatttttacttctt |
247 |
Q |
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| T |
50112133 |
acctctttgacgtacaagattattggaggggtacttgatttttacttctt |
50112084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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