View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5327_low_7 (Length: 259)

Name: NF5327_low_7
Description: NF5327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5327_low_7
NF5327_low_7
[»] chr4 (2 HSPs)
chr4 (26-238)||(11887331-11887540)
chr4 (173-249)||(53632685-53632761)
[»] scaffold0009 (1 HSPs)
scaffold0009 (144-243)||(223407-223505)
[»] scaffold0059 (1 HSPs)
scaffold0059 (146-246)||(30033-30133)
[»] chr1 (1 HSPs)
chr1 (173-249)||(29914197-29914273)
[»] chr5 (2 HSPs)
chr5 (171-249)||(9129160-9129238)
chr5 (179-246)||(17988240-17988308)
[»] chr6 (2 HSPs)
chr6 (17-66)||(20195263-20195312)
chr6 (17-66)||(22089286-22089335)
[»] chr8 (1 HSPs)
chr8 (173-249)||(26911361-26911437)
[»] chr2 (1 HSPs)
chr2 (182-249)||(19280171-19280238)
[»] chr3 (1 HSPs)
chr3 (173-246)||(30527574-30527647)


Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 26 - 238
Target Start/End: Original strand, 11887331 - 11887540
Alignment:
Q  26 agggaagatataaagaaagagaaggtttggagaaaggcatgtaaagtaacaaagcctattatactgacgaatgtgattgataaaacaatcttctaatctc 125  Q
    ||||||||||||||||||| |||||||| | |||||| | |||||| ||||| || | ||||| |||||||| ||||||||||| ||||||||| |||||    
T  11887331 agggaagatataaagaaagtgaaggttttgtgaaaggaaagtaaaggaacaaggcttcttataatgacgaatatgattgataaagcaatcttctcatctc 11887430  T
Q  126 cttcttccacagttgccaccacgtgtacaaaagaaggtaaaagctctttgagataatggataattaatggtcttggaagacataaaatcttggaaatctt 225  Q
    ||||||||| || ||||||   | |||||||||||||||||| |  |||||||| |||||||||||||| |||||| |||||||||||||||||||||||    
T  11887431 cttcttccataggtgccac---gcgtacaaaagaaggtaaaaacattttgagatgatggataattaatgatcttgggagacataaaatcttggaaatctt 11887527  T
Q  226 ttgaagaaaggaa 238  Q
     ||||||||||||    
T  11887528 gtgaagaaaggaa 11887540  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 53632685 - 53632761
Alignment:
Q  173 ttgagataatggataattaatggtcttggaagacataaaatcttggaaatcttttgaagaaaggaacaatgatgatg 249  Q
    |||||||| |||||||||||| ||||| | ||||||||||||||||||||||| ||||||||||   ||||||||||    
T  53632685 ttgagatagtggataattaattgtctttggagacataaaatcttggaaatcttgtgaagaaaggtgtaatgatgatg 53632761  T

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Target: scaffold0009 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 223505 - 223407
Alignment:
Q  144 ccacgtgtacaaaagaaggtaaaagctctttgagataatggataattaatggtcttggaagacataaaatcttggaaatcttttgaagaaaggaacaatg 243  Q
    ||||| |||||||||||||||||||  |||||| ||| |||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||    
T  223505 ccacgagtacaaaagaaggtaaaagtgctttgatatagtggataattaatggtcttgggagaca-aaaatcttggaaatcttgtgaagaaaggaacaatg 223407  T

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Target: scaffold0059 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 246
Target Start/End: Complemental strand, 30133 - 30033
Alignment:
Q  146 acgtgtacaaaagaaggtaaaagctctttgagataatggataattaatggtcttggaagacataaaatcttggaaatcttttgaagaaaggaacaatgat 245  Q
    ||||| || ||||||||||||| | | |||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| |||    
T  30133 acgtgcacgaaagaaggtaaaaacgccttgagatagtggataattaatggccttgggagacataaaatcttggaaatcttgtgaagaaaggaacaacgat 30034  T
Q  246 g 246  Q
    |    
T  30033 g 30033  T

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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 29914273 - 29914197
Alignment:
Q  173 ttgagataatggataattaatggtcttggaagacataaaatcttggaaatcttttgaagaaaggaacaatgatgatg 249  Q
    |||||||| |||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  29914273 ttgagatagtggataattaattgtcttgggagacataaaatcatggaaatcttttgaagaaaggcacaatgatgatg 29914197  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 249
Target Start/End: Original strand, 9129160 - 9129238
Alignment:
Q  171 ctttgagataatggataattaatggtcttggaagacataaaatcttggaaatcttttgaagaaaggaacaatgatgatg 249  Q
    ||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  9129160 ctttgagataatggataattaattgccttgggagacataaagtcttggaaatcttgtgaagaaaggcacaatgatgatg 9129238  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 17988308 - 17988240
Alignment:
Q  179 taatggataattaatggtcttggaagacataaaatcttg-gaaatcttttgaagaaaggaacaatgatg 246  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| || |||||||||||||||||    
T  17988308 taatggataattaatggtcttggaagacataaaatcttgaaaaatcttgtggagaaaggaacaatgatg 17988240  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 20195312 - 20195263
Alignment:
Q  17 aatagtaccagggaagatataaagaaagagaaggtttggagaaaggcatg 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20195312 aatagtaccagggaagatataaagaaagagaaggtttggagaaaggcatg 20195263  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 22089335 - 22089286
Alignment:
Q  17 aatagtaccagggaagatataaagaaagagaaggtttggagaaaggcatg 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22089335 aatagtaccagggaagatataaagaaagagaaggtttggagaaaggcatg 22089286  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 26911361 - 26911437
Alignment:
Q  173 ttgagataatggataattaatggtcttggaagacataaaatcttggaaatcttttgaagaaaggaacaatgatgatg 249  Q
    |||||||| ||||||||||||   ||||| ||||||||||||||||||||||| ||||||||||  |||||||||||    
T  26911361 ttgagatagtggataattaatttccttgggagacataaaatcttggaaatcttgtgaagaaaggtgcaatgatgatg 26911437  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 19280238 - 19280171
Alignment:
Q  182 tggataattaatggtcttggaagacataaaatcttggaaatcttttgaagaaaggaacaatgatgatg 249  Q
    ||||||||||||| | ||||||||||||||| ||||| |||||| || ||||||||||||||||||||    
T  19280238 tggataattaatgattttggaagacataaaaccttgggaatcttgtggagaaaggaacaatgatgatg 19280171  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 30527574 - 30527647
Alignment:
Q  173 ttgagataatggataattaatggtcttggaagacataaaatcttggaaatcttttgaagaaaggaacaatgatg 246  Q
    |||||||| |||||||||||| | ||||| ||||||||||| ||| ||||||| ||||||||||  ||||||||    
T  30527574 ttgagatagtggataattaattgccttgggagacataaaatgttgaaaatcttgtgaagaaaggtgcaatgatg 30527647  T

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