View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5328-Insertion-1 (Length: 502)
Name: NF5328-Insertion-1
Description: NF5328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5328-Insertion-1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 63 - 463
Target Start/End: Original strand, 50510195 - 50510596
Alignment:
| Q |
63 |
cattccatacttgtgttgctgcattacatctgacaaacacatgtcaatcattctcgtaattagtttcacagcgaggatggcaattttagtattgtaattg |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50510195 |
cattccatacttgtgttgctgcattacatctgagaaacacatgtcaatcattctcgtaattagtttcacagcgaggatggcaattttagtattgtaattg |
50510294 |
T |
|
| Q |
163 |
ttaatttgttagtttatgttgaatgtggaagtcgaacctgaaaccaactttatcactctatttatttatt----cttttgtcttagccatcaggtcaacc |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
50510295 |
ttaatttgttagtttatgttgaatgtggaagtcgaacctgaaaccaactttatcactctatttatttatttattcttttgtcttagccatcaggtcaacc |
50510394 |
T |
|
| Q |
259 |
ttattagtctttcttttttgaattgttaattttcgtaagtagataaaaaattaaggatgaatacaccactacttgaattaggaacaagtatcatccgtct |
358 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50510395 |
tta---gtctttcttttttgaattgttaattttcgtaagtggataaaaaatgaaggatgaatacaccactacttgaattaggaacaagtatcatccgtct |
50510491 |
T |
|
| Q |
359 |
caatgtgtcccttattacccacccttatcatttgtctattatcaacttgaaataatcacttatttacatattctaatgcacatatggtaagagttaagac |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
50510492 |
caatgtgtcccttattacccacccttatcatttgtctattatcaacttgaaataaccacttacttacatattcttatgcacatatggtaagagttaagac |
50510591 |
T |
|
| Q |
459 |
aaaaa |
463 |
Q |
| |
|
||||| |
|
|
| T |
50510592 |
aaaaa |
50510596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 459 - 502
Target Start/End: Original strand, 50510827 - 50510870
Alignment:
| Q |
459 |
aaaaaactacaccaatgaagatactagcacgcttatactattgt |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
50510827 |
aaaaaactacaccaatgaagatactagcacacttatactattgt |
50510870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 50509932 - 50509987
Alignment:
| Q |
8 |
ctgcactggaccgtgttgttcaccatgattggtcttcttctcacaggttgttttccatt |
66 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
50509932 |
ctgcactggaccatgttgttcaccctgattgg---tcttctcacaggttgttttccatt |
50509987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University