View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5328_low_3 (Length: 382)
Name: NF5328_low_3
Description: NF5328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5328_low_3 |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 10 - 177
Target Start/End: Original strand, 25348161 - 25348328
Alignment:
| Q |
10 |
aattctcacactgtaactttcaatgaagactatgtataccctctattgacataattatggagtaggctcagagagttttacaactatgagggtcagacat |
109 |
Q |
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| T |
25348161 |
aattctcacactgtaactttcaatgaagactatgcataccctctattgaaagaaggatgaagtaggctcaaagagttttacaactatgagggtcagaaac |
25348260 |
T |
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| Q |
110 |
aaatctttctaatctatctcgaaaggaatcattttttgttaactttggggaaaaaatatgcaactttc |
177 |
Q |
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| T |
25348261 |
aaatctttctaagttatctcggaaggaatcattttttgttaactttggggaaaacatatgcaactttc |
25348328 |
T |
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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 48185402 - 48185330
Alignment:
| Q |
272 |
aggtccttaatcgagacttcaaggatttcctttgggaattatatgattttgaccacttggttctatgcggaaaact |
347 |
Q |
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| T |
48185402 |
aggtccttaatcgagatttcaaggagttcctttggcaat---atgattttgaccacttggttctttgcggaaaact |
48185330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 185 - 368
Target Start/End: Original strand, 19341274 - 19341454
Alignment:
| Q |
185 |
atttcaaactattaataattttcattactttacttctatcctttgaatatttcttttaatcacgtatataaattgtttatgatctttaggtccttaatcg |
284 |
Q |
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| T |
19341274 |
atttcatactattaattattgtcactactttatttctatcctttgaatacttcttttaaccgtatatatacattgcctatcatgtttacgtgcttaatcg |
19341373 |
T |
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| Q |
285 |
agacttcaaggatttcctttgggaattatatgattttgaccacttggttctatgcggaaaacttaacaatccaagaaccatgtg |
368 |
Q |
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| T |
19341374 |
agatttcaaagacttcctttcgca---atatgattttaaccacttggtcctatgcggaaaagttaacggtccaagaaccatgtg |
19341454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 19336331 - 19336449
Alignment:
| Q |
10 |
aattctcacactgtaactttcaatgaagactatgtataccctctattgacataattatggagtaggctcagagagttttacaactatgagggtcagacat |
109 |
Q |
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| T |
19336331 |
aattctcacactgtagttttcaatggagactatgcataccctctcttgatagaaggatggagtaggcttagtgaattttacaactttgagggtcgcaaac |
19336430 |
T |
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| Q |
110 |
aaatctttctaatctatct |
128 |
Q |
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| T |
19336431 |
aaatctttctgaactatct |
19336449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 44335 - 44298
Alignment:
| Q |
10 |
aattctcacactgtaactttcaatgaagactatgtata |
47 |
Q |
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| T |
44335 |
aattctcacaccgtaactttcaatgaagactatgtata |
44298 |
T |
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