View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5329-Insertion-1 (Length: 253)

Name: NF5329-Insertion-1
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5329-Insertion-1
NF5329-Insertion-1
[»] chr7 (5 HSPs)
chr7 (10-135)||(47588549-47588674)
chr7 (197-253)||(47588736-47588792)
chr7 (198-249)||(11698812-11698863)
chr7 (197-249)||(36933945-36933997)
chr7 (197-238)||(26199338-26199379)
[»] chr3 (3 HSPs)
chr3 (197-249)||(25498547-25498599)
chr3 (197-249)||(17113971-17114023)
chr3 (10-52)||(37045818-37045860)
[»] scaffold0005 (2 HSPs)
scaffold0005 (197-247)||(47736-47786)
scaffold0005 (200-249)||(250878-250927)
[»] chr4 (11 HSPs)
chr4 (197-247)||(14791945-14791995)
chr4 (10-56)||(21568360-21568406)
chr4 (200-249)||(24958058-24958107)
chr4 (205-248)||(23533066-23533109)
chr4 (198-247)||(47518922-47518971)
chr4 (198-249)||(34227462-34227513)
chr4 (86-132)||(50416369-50416415)
chr4 (198-239)||(6409618-6409659)
chr4 (200-249)||(14566448-14566497)
chr4 (197-253)||(50589280-50589337)
chr4 (198-246)||(23054743-23054791)
[»] chr2 (4 HSPs)
chr2 (197-246)||(3257982-3258031)
chr2 (10-52)||(41325573-41325615)
chr2 (198-249)||(17374916-17374967)
chr2 (198-246)||(3921196-3921244)
[»] chr8 (5 HSPs)
chr8 (85-132)||(8187639-8187686)
chr8 (198-248)||(10408428-10408478)
chr8 (8-65)||(8187567-8187624)
chr8 (201-246)||(5994216-5994261)
chr8 (10-63)||(30906111-30906164)
[»] chr5 (5 HSPs)
chr5 (198-249)||(7767496-7767547)
chr5 (197-249)||(25444512-25444564)
chr5 (197-249)||(27632524-27632576)
chr5 (198-249)||(6989428-6989479)
chr5 (198-249)||(21600788-21600839)
[»] chr1 (4 HSPs)
chr1 (198-249)||(34117648-34117699)
chr1 (198-249)||(39709468-39709519)
chr1 (202-249)||(34654544-34654591)
chr1 (197-249)||(32947229-32947281)
[»] chr6 (4 HSPs)
chr6 (199-249)||(22696255-22696305)
chr6 (197-249)||(34213853-34213905)
chr6 (198-249)||(21881020-21881071)
chr6 (201-253)||(34503270-34503322)
[»] scaffold0009 (1 HSPs)
scaffold0009 (205-249)||(54072-54116)


Alignment Details
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 47588549 - 47588674
Alignment:
Q  10 ctctttagcataagacgtacgaaagaggtcgctcaaaatacaacgagtctgacagttaactgtnnnnnnnnnnnncaggcattagtcaatacccaaacaa 109  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||            |||||||||||| |||| |||||||    
T  47588549 ctctttagcacaagacgtacgaaagaggtcgctcaaaatacaacgagtctgacagtcaactgtaaaaacaaaaaacaggcattagtcgatactcaaacaa 47588648  T
Q  110 aacaacaggtccgaccgccactgttg 135  Q
    ||||||||||||||||||||||||||    
T  47588649 aacaacaggtccgaccgccactgttg 47588674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 47588736 - 47588792
Alignment:
Q  197 gctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaacccacaa 253  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||    
T  47588736 gctgccacaaaaacaacttccaccacctacattctgctgctcgcacacagcccacaa 47588792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 11698863 - 11698812
Alignment:
Q  198 ctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    |||||||||||||||||||  ||||| ||||| |||||||||||||||||||    
T  11698863 ctgccacaaaaacaacttctaccacccacattctgctgctcgcacacaaccc 11698812  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 36933945 - 36933997
Alignment:
Q  197 gctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    ||||||||| ||||||||||| |||||||||||   |||||||||||||||||    
T  36933945 gctgccacagaaacaacttccaccacctacattcaactgctcgcacacaaccc 36933997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 26199338 - 26199379
Alignment:
Q  197 gctgccacaaaaacaacttccgccacctacattatgctgctc 238  Q
    ||||||||| ||||||||||| ||||||||||||| ||||||    
T  26199338 gctgccacacaaacaacttccaccacctacattatactgctc 26199379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 25498547 - 25498599
Alignment:
Q  197 gctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  25498547 gctgccacaaaaacaacttccaccacctacattctgctgctcgcacacaaccc 25498599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 17114023 - 17113971
Alignment:
Q  197 gctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    |||||||||||| |||||||| | |||||||||  ||||||||||||||||||    
T  17114023 gctgccacaaaagcaacttccactacctacattccgctgctcgcacacaaccc 17113971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 37045860 - 37045818
Alignment:
Q  10 ctctttagcataagacgtacgaaagaggtcgctcaaaatacaa 52  Q
    |||||||||||||| ||||| |||||||||||||||| |||||    
T  37045860 ctctttagcataaggcgtactaaagaggtcgctcaaagtacaa 37045818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 47786 - 47736
Alignment:
Q  197 gctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaac 247  Q
    ||||||||||||||||||||| |||||||||||  ||||||||||||||||    
T  47786 gctgccacaaaaacaacttccaccacctacattccgctgctcgcacacaac 47736  T

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Target: scaffold0005; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 250878 - 250927
Alignment:
Q  200 gccacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    |||||| ||||||||||| ||||| |||||  ||||||||||||||||||    
T  250878 gccacataaacaacttccaccaccaacattccgctgctcgcacacaaccc 250927  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 14791945 - 14791995
Alignment:
Q  197 gctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaac 247  Q
    ||||||||||||||||||||| |||||||||||  ||||||||||||||||    
T  14791945 gctgccacaaaaacaacttccaccacctacattccgctgctcgcacacaac 14791995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 21568360 - 21568406
Alignment:
Q  10 ctctttagcataagacgtacgaaagaggtcgctcaaaatacaacgag 56  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  21568360 ctctttagcacaagacgtaccaaagaggtcgctcaaaatacaacgag 21568406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 24958107 - 24958058
Alignment:
Q  200 gccacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    |||||||||||||||||| |||||||||||||| ||||||| ||||||||    
T  24958107 gccacaaaaacaacttccaccacctacattatgttgctcgctcacaaccc 24958058  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 23533066 - 23533109
Alignment:
Q  205 aaaaacaacttccgccacctacattatgctgctcgcacacaacc 248  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||    
T  23533066 aaaaacaacttccaccacctacaatatgctgctcgcacacaacc 23533109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 47518971 - 47518922
Alignment:
Q  198 ctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaac 247  Q
    |||||||||||||||||||  ||||| ||||| |||||||||||||||||    
T  47518971 ctgccacaaaaacaacttctaccacccacattctgctgctcgcacacaac 47518922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 34227513 - 34227462
Alignment:
Q  198 ctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    |||||||||||||||||||  ||||| ||||| |||| ||||||||||||||    
T  34227513 ctgccacaaaaacaacttctaccacccacattttgctactcgcacacaaccc 34227462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 50416415 - 50416369
Alignment:
Q  86 aggcattagtcaatacccaaacaaaacaacaggtccgaccgccactg 132  Q
    ||||||||||| ||||||||||||| |||| ||| ||||||||||||    
T  50416415 aggcattagtcgatacccaaacaaagcaacgggttcgaccgccactg 50416369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 6409618 - 6409659
Alignment:
Q  198 ctgccacaaaaacaacttccgccacctacattatgctgctcg 239  Q
    |||||||||||||||||||| |||||||||||  ||||||||    
T  6409618 ctgccacaaaaacaacttccaccacctacattccgctgctcg 6409659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 14566497 - 14566448
Alignment:
Q  200 gccacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    |||||| ||||||||||| ||||| |||||  ||||||||||||||||||    
T  14566497 gccacataaacaacttccaccaccaacattccgctgctcgcacacaaccc 14566448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 50589280 - 50589337
Alignment:
Q  197 gctgccacaaaa-acaacttccgccacctacattatgctgctcgcacacaacccacaa 253  Q
    |||||||||||| ||||||||| ||||| ||| |  ||||||||||||||||||||||    
T  50589280 gctgccacaaaaaacaacttccaccacccacaatccgctgctcgcacacaacccacaa 50589337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 23054791 - 23054743
Alignment:
Q  198 ctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaa 246  Q
    |||||||||||||||||||| ||||| |||||  | |||||||||||||    
T  23054791 ctgccacaaaaacaacttccaccacccacattccggtgctcgcacacaa 23054743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 3258031 - 3257982
Alignment:
Q  197 gctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaa 246  Q
    ||||||||||||||||||||| |||||||||||  |||||||||||||||    
T  3258031 gctgccacaaaaacaacttccaccacctacattccgctgctcgcacacaa 3257982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 41325615 - 41325573
Alignment:
Q  10 ctctttagcataagacgtacgaaagaggtcgctcaaaatacaa 52  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  41325615 ctctttagcacaagacgtactaaagaggtcgctcaaaatacaa 41325573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 17374916 - 17374967
Alignment:
Q  198 ctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    |||||||||||| ||||||| ||||| |||||  ||||||||||||||||||    
T  17374916 ctgccacaaaaataacttccaccacccacattccgctgctcgcacacaaccc 17374967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 3921196 - 3921244
Alignment:
Q  198 ctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaa 246  Q
    |||||||||||||||||||  ||||| |||||  |||||||||||||||    
T  3921196 ctgccacaaaaacaacttctaccacccacattccgctgctcgcacacaa 3921244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 8187639 - 8187686
Alignment:
Q  85 caggcattagtcaatacccaaacaaaacaacaggtccgaccgccactg 132  Q
    |||||| ||| ||||| |||||||||||||||||||||||||||||||    
T  8187639 caggcactagccaatatccaaacaaaacaacaggtccgaccgccactg 8187686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 10408428 - 10408478
Alignment:
Q  198 ctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaacc 248  Q
    |||||||||||||||||||| || ||||||||  |||||||||||||||||    
T  10408428 ctgccacaaaaacaacttccaccgcctacattccgctgctcgcacacaacc 10408478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 8187567 - 8187624
Alignment:
Q  8 gtctctttagcataagacgtacgaaagaggtcgctcaaaatacaacgagtctgacagt 65  Q
    |||||||||| ||||||||||  ||| |||||||||||||||||| ||||||| ||||    
T  8187567 gtctctttagtataagacgtattaaataggtcgctcaaaatacaatgagtctgtcagt 8187624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 5994216 - 5994261
Alignment:
Q  201 ccacaaaaacaacttccgccacctacattatgctgctcgcacacaa 246  Q
    ||||||||||||||||| ||||||| ||| |||||||||| |||||    
T  5994216 ccacaaaaacaacttccaccacctagattctgctgctcgcgcacaa 5994261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 30906111 - 30906164
Alignment:
Q  10 ctctttagcataagacgtacgaaagaggtcgctcaaaatacaacgagtctgaca 63  Q
    |||||||||| ||| ||||| ||||||| ||| ||||||||||| |||||||||    
T  30906111 ctctttagcacaaggcgtaccaaagagggcgcacaaaatacaactagtctgaca 30906164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 7767547 - 7767496
Alignment:
Q  198 ctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    |||||||||||||||||||| ||||| |||||  ||||||||||||||||||    
T  7767547 ctgccacaaaaacaacttccaccacccacatttcgctgctcgcacacaaccc 7767496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 25444564 - 25444512
Alignment:
Q  197 gctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    ||||| ||||||||||||||| |||||||||||  |||| |||||||||||||    
T  25444564 gctgctacaaaaacaacttccaccacctacattccgctgatcgcacacaaccc 25444512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 27632576 - 27632524
Alignment:
Q  197 gctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    |||||||||||||  |||||| ||||||||||  |||||||||||||||||||    
T  27632576 gctgccacaaaaattacttccaccacctacatcctgctgctcgcacacaaccc 27632524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 6989428 - 6989479
Alignment:
Q  198 ctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    |||||||||||||||||||  ||||| |||||  ||||||||||||||||||    
T  6989428 ctgccacaaaaacaacttctaccacccacattccgctgctcgcacacaaccc 6989479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 21600788 - 21600839
Alignment:
Q  198 ctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    |||||||||||||||||||  ||||| |||||  ||||||||||||||||||    
T  21600788 ctgccacaaaaacaacttctaccacccacattccgctgctcgcacacaaccc 21600839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 34117648 - 34117699
Alignment:
Q  198 ctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    |||||||||||||||||||| ||||| |||||  ||||||||||||||||||    
T  34117648 ctgccacaaaaacaacttccaccacccacattccgctgctcgcacacaaccc 34117699  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 39709519 - 39709468
Alignment:
Q  198 ctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    |||||||||||||||||| | ||||| ||||| |||||||||||||||||||    
T  39709519 ctgccacaaaaacaactttcaccacccacattctgctgctcgcacacaaccc 39709468  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 34654544 - 34654591
Alignment:
Q  202 cacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    |||||||||||||||| ||||| |||||  ||||||||||||||||||    
T  34654544 cacaaaaacaacttccaccacccacattccgctgctcgcacacaaccc 34654591  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 32947281 - 32947229
Alignment:
Q  197 gctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    ||||| ||||||||||||||| ||| ||||||   ||||||||||||||||||    
T  32947281 gctgctacaaaaacaacttccaccatctacatcccgctgctcgcacacaaccc 32947229  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 22696255 - 22696305
Alignment:
Q  199 tgccacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    ||||| ||||||||||||| ||||||||||| || ||||||||||||||||    
T  22696255 tgccaaaaaaacaacttccaccacctacattttgttgctcgcacacaaccc 22696305  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 34213905 - 34213853
Alignment:
Q  197 gctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    ||||||||||||||||||| | ||||| ||||| ||||||| |||||||||||    
T  34213905 gctgccacaaaaacaactttcaccacccacattttgctgcttgcacacaaccc 34213853  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 21881020 - 21881071
Alignment:
Q  198 ctgccacaaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    |||||||||||| ||||||| ||||| |||||  ||||||||||||||||||    
T  21881020 ctgccacaaaaataacttccaccacccacattccgctgctcgcacacaaccc 21881071  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 34503322 - 34503270
Alignment:
Q  201 ccacaaaaacaacttccgccacctacattatgctgctcgcacacaacccacaa 253  Q
    ||||||||||||||||| |||||||||||  | |||||| |||| ||||||||    
T  34503322 ccacaaaaacaacttccaccacctacattccgatgctcgtacactacccacaa 34503270  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 54072 - 54116
Alignment:
Q  205 aaaaacaacttccgccacctacattatgctgctcgcacacaaccc 249  Q
    ||||||||||||| |||||||||||  |||||||||||| |||||    
T  54072 aaaaacaacttccaccacctacatttcgctgctcgcacataaccc 54116  T

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